| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,355,596 – 11,355,688 |
| Length | 92 |
| Max. P | 0.607769 |
| Location | 11,355,596 – 11,355,688 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 79.10 |
| Shannon entropy | 0.44555 |
| G+C content | 0.54442 |
| Mean single sequence MFE | -31.96 |
| Consensus MFE | -20.05 |
| Energy contribution | -20.46 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11355596 92 - 27905053 CUCCGCUGGCAGUGUUCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGU--------G-CAGCCAGCAGACACGGACAUGGCCAUAAAACGG ..(((.((((.((((((....---......((((......))))(((((..(((((....)--------)-..)))..)))))..)))))).)))).....))) ( -31.10, z-score = -0.75, R) >droSim1.chr3R 17397702 92 + 27517382 CUCCGCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGU--------G-CAGACAGCAGACACGGACAUGGCCAUAAAACGG ..(((.((((.((((((....---.(((((((((......))))(((((...((.....))--------.-)))))....))))))))))).)))).....))) ( -32.90, z-score = -1.47, R) >droSec1.super_0 10539969 92 + 21120651 CUCCGCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUUUGAGCGUCUGAAGGCCACGAGU--------G-CAGACAGCAGACACGGACAUGGCCAUAAAACGG ..(((.((((.((((((....---.(((((((((......))))(((((...((.....))--------.-)))))....))))))))))).)))).....))) ( -32.90, z-score = -1.35, R) >droYak2.chr3R 13761001 92 + 28832112 CUCCGCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGU--------G-CAGACAGCAGACACGGACAUGGCCAUAAAACGG ..(((.((((.((((((....---.(((((((((......))))(((((...((.....))--------.-)))))....))))))))))).)))).....))) ( -32.90, z-score = -1.47, R) >droEre2.scaffold_4770 10883555 99 - 17746568 CUCCGCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGAC-AG-CAGACAGCAGACACGGACAUGGCCAUAAAACGG ..(((.((((.((((((....---.(((((((((......))))(((((...(((....).))....-..-)))))....))))))))))).)))).....))) ( -34.40, z-score = -1.16, R) >droAna3.scaffold_13340 15969047 92 - 23697760 CUGCUCUGGCAGUGUCCGACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGA--------G-CAGACAGCAGACACGGACAUGACCAUAAAACGG ......(((..(((((((.((---((((..((((......))))(((....))))))))).--------(-(.....)).....)))))))..)))........ ( -29.10, z-score = -0.72, R) >dp4.chr2 444990 90 + 30794189 CCACUCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGA--------G-CAGACAG--GGCCAGGACACGGCCAUAAAAUGG (((...((((.((((((....---...(.(((((......))))).)....((((.(....--------.-......)--)))).)))))).)))).....))) ( -32.00, z-score = -1.45, R) >droPer1.super_6 399466 90 + 6141320 CCACUCUGGCAGUGUCCAACU---UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGA--------G-CAGACAG--GGCCAGGACACGGCCAUAAAAUGG (((...((((.((((((....---...(.(((((......))))).)....((((.(....--------.-......)--)))).)))))).)))).....))) ( -32.00, z-score = -1.45, R) >droWil1.scaffold_181089 9813185 101 + 12369635 CUCCUGCUGU-GUGUCCAGAUUUGUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGACAAGCAGA-UG-CAGACAGUUUUCAGGGACAUGGCCAUAAAGUGC .(((((((((-.(((....((((((.((((((((......))))(((....)))...)))).)))))-))-)).))))....)))))................. ( -27.90, z-score = 0.53, R) >droMoj3.scaffold_6540 22250617 99 - 34148556 CCCGCCUGGCACUCGGCAC-----UCUCGCGUUUGUUUAUGAGCGUCUGAAGGCCAACAGCAACAGACAGACAGACAGAGGCCAGCGACAAUGCCGUAAAGUGC ........((((((((((.-----(.((((((((((((......(((((...((.....))..))))))))))))).(....).)))).).)))))...))))) ( -31.00, z-score = -0.54, R) >droVir3.scaffold_12855 4951023 102 - 10161210 CCUGUCUGGUAUUGUGCGACU-UGUGUUGAGUUUGUUUAUGAGCGUCUGAAGGCCAACAUCAGCAGA-CGCCAGACAGAAGGCAGCGAAAAUGCCAUAAAAUGG .(((((((((......((((.-...)))).(((((((.(((...(((....)))...))).))))))-))))))))))..((((.......))))......... ( -35.40, z-score = -2.81, R) >consensus CUCCGCUGGCAGUGUCCAACU___UGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGU________G_CAGACAGCAGACACGGACAUGGCCAUAAAACGG ......((((.((((((.............((((......))))(((((......................))))).........)))))).))))........ (-20.05 = -20.46 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:45 2011