| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,346,335 – 11,346,430 |
| Length | 95 |
| Max. P | 0.534994 |
| Location | 11,346,335 – 11,346,430 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.82 |
| Shannon entropy | 0.41572 |
| G+C content | 0.32506 |
| Mean single sequence MFE | -12.83 |
| Consensus MFE | -7.53 |
| Energy contribution | -7.62 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11346335 95 - 27905053 CGCAUUGACACGUCAGUGUCAUUAAAAACC-------GAAAACAGAAAACAGACGACCCC---------AAAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCU-- .((..((((((....)))))).........-------.......................---------...............((..(((-------((....).))))...)))).-- ( -9.70, z-score = -1.00, R) >droPer1.super_6 5731986 88 - 6141320 CGCAUUGACACGUCAGUGUCAUU--------------AAAAACCGAAAACAGACGACUUC---------AGAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCA-- .((..((((((....))))))..--------------...................(((.---------((((...((......))....)-------))).)))..........)).-- ( -13.40, z-score = -1.62, R) >dp4.chr2 30339325 88 - 30794189 CGCAUUGACACGUCAGUGUCAUU--------------AAAAACCGAAAACAGACGACUUC---------AGAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCA-- .((..((((((....))))))..--------------...................(((.---------((((...((......))....)-------))).)))..........)).-- ( -13.40, z-score = -1.62, R) >droAna3.scaffold_13340 15960059 85 - 23697760 CGCAUCGACACGCCAGUGUCAUU--------------AAAAACCAAGAACAGACA------------UUGGAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCG-- (((...(((((....)))))...--------------.....((((.........------------))))....................-------.................)))-- ( -13.30, z-score = -2.04, R) >droEre2.scaffold_4770 10874463 87 - 17746568 CGCAUUGACACGUCAGUGUCAUU---------------AAAACUGAAAACAGGCGACCCC---------AAAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCA-- (((..((((((....))))))..---------------....(((....)))))).....---------...............(((.(((-------(.((.....)).))))))).-- ( -15.20, z-score = -2.42, R) >droYak2.chr3R 13751444 105 + 28832112 CGCAUUGACACGUCAGUGUCAUUAAAAACUGAAAAUAGAAAACAGAAAGCAGACGACCCC------CCUAAAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCA-- .((..((((((....)))))).......(((...........)))...))..........------..................(((.(((-------(.((.....)).))))))).-- ( -12.70, z-score = -1.84, R) >droSec1.super_0 10522019 95 + 21120651 CGCAUUGACACGUCAGUGUCAUUAAAAACC-------GAAAACAGAAAACAGACGAACCC---------AAAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCU-- .((..((((((....)))))).........-------.......................---------...............((..(((-------((....).))))...)))).-- ( -9.70, z-score = -0.91, R) >droSim1.chr3R 17387538 95 + 27517382 CGCAUUGACACGUCAGUGUCAUUAAAAACC-------GAAAACAGAAAACAGACGACCCC---------AAAUUAAAUAAAAAAGUGAUUA-------UCUAAAGAAUAAAUAACGCU-- .((..((((((....)))))).........-------.......................---------...............((..(((-------((....).))))...)))).-- ( -9.70, z-score = -1.00, R) >droMoj3.scaffold_6540 22237181 84 - 34148556 CGCAUUGACACUUCAGUGUCAUUA-------------AAAAACCAAG---AGACAGUUU---------GAAAUUAAAUAAAAAUGUGAUUA---------UGCGUCAUAAAUAUCGCA-- (((((((((((....)))))....-------------......((((---......)))---------)............))))))....---------((((..........))))-- ( -14.30, z-score = -1.15, R) >droGri2.scaffold_14906 4560820 84 + 14172833 CGCAUUGACACGUCAGUGUCAUUA-------------AAAAUGCAAG---AGACGAUUU---------AACAUUAAAUAAAAAUGCGAUUA---------UGCGUCGUAAAUAACACA-- .((((((((((....))))))...-------------...))))...---.((((...(---------((((((.......))))...)))---------..))))............-- ( -15.70, z-score = -0.88, R) >droVir3.scaffold_12855 4936180 84 - 10161210 CGCAUUGACACGUCAGUGUCAUUA-------------AAAAACCAAG---AGACGAUUU---------AAAAUUAAAUAAAAAUGCGAUUA---------UGCAUCGUAAAUAACGCA-- .((..((((((....))))))...-------------..........---.........---------...............((((((..---------...))))))......)).-- ( -15.20, z-score = -1.64, R) >droWil1.scaffold_181089 2566866 105 - 12369635 CGCAUUGACACGUCAGUGUCAUU---------------AAAACCGAAAACAGACAACGCCAACAAUUUGAAAUUAAAUAAAAAAGUGAUUACGAGCAUUGCAAACAAUAAAUAAAACCCA .(((.((((((....))))))..---------------...........................((((.(((((..........))))).))))...)))................... ( -11.70, z-score = -0.28, R) >consensus CGCAUUGACACGUCAGUGUCAUUA_____________AAAAACCGAAAACAGACGACCCC_________AAAUUAAAUAAAAAAGUGAUUA_______UCUAAAGAAUAAAUAACGCA__ .....((((((....))))))................................................................................................... ( -7.53 = -7.62 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:44 2011