Locus 1011

Sequence ID dm3.chr2L
Location 7,527,797 – 7,527,891
Length 94
Max. P 0.596681
window1378

overview

Window 8

Location 7,527,797 – 7,527,891
Length 94
Sequences 7
Columns 95
Reading direction reverse
Mean pairwise identity 73.96
Shannon entropy 0.48020
G+C content 0.43616
Mean single sequence MFE -14.20
Consensus MFE -8.28
Energy contribution -6.86
Covariance contribution -1.42
Combinations/Pair 1.58
Mean z-score -1.14
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.596681
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 7527797 94 - 23011544
UACGCACUUUUACUUCUACGCCAAGCUUCUCUUCCCCU-CUCUCUGUAACAGCAAAUGUAUCUCGAAGAUACUUUUGACUUGCACAACUUUCGCC
...((..............((...))............-.....(((((...((((.(((((.....))))).))))..)))))........)). ( -11.70, z-score =  -1.17, R)
>droSim1.chr2L 7325586 94 - 22036055
UACGCACUUUUACUUCUACACCAAGCUUCUCUUCCCGU-CUCGCUGUAUCAACAAAUGUAUCUCAAAGAUACUUUGGACUUGCACAACUUUCGCC
...((..................(((............-...)))(((....((((.(((((.....)))))))))....))).........)). ( -11.66, z-score =  -1.10, R)
>droSec1.super_3 3043944 94 - 7220098
UACGCACUUUUACUUCUACACCAAGCUUCUCUUCCCGU-CUCGCUGUAUCAACAAAUGUAUCUCAAAGAUACUUUGGACUUGCACAACUUUCGCC
...((..................(((............-...)))(((....((((.(((((.....)))))))))....))).........)). ( -11.66, z-score =  -1.10, R)
>droYak2.chr2L 16956322 95 + 22324452
UACGCACUUUUACUUCUACACCAAGCUACUCUUCCCCUACUCUGUGUAUCAGCAAAUGUAUCUCUAAGAUACUUUUGACUUGCACAACUUUCGCC
..........................................((((((....((((.(((((.....))))).))))...))))))......... ( -14.60, z-score =  -2.74, R)
>droEre2.scaffold_4929 16448320 94 - 26641161
UACGCACUUUUACUUCUACACCAAGCUUCUCUGCCCGU-CUCUUUGUAUCAGCAAAUGUAUCUCUAAGAUACUUUUGACUUGCACAACUUUCGCC
...((...................((......))....-.....((((....((((.(((((.....))))).))))...))))........)). ( -13.00, z-score =  -1.51, R)
>dp4.chr4_group3 1396068 84 - 11692001
UACGCACUUUUACUUCUGAAAGAUACUUUGCUUCUGAG-CUCGGAGAUCUCUUGGCUGUGUCUCUAAGGU-CUGCCAACUUUCGCC---------
...((.((((((....)))))).......((....((.-((..(((((..(......).)))))..)).)-).))........)).--------- ( -16.00, z-score =   0.49, R)
>droPer1.super_1 2864536 84 - 10282868
UACGCACUUUUACUUCUGAAAGAUACUUUGCUUCUGAG-CUCGGAGAUCUCUUGGCUGUGUCUCUGAGGU-CUGCCAACUUUCGCC---------
...((.((((((....)))))).......((....((.-(((((((((..(......).))))))))).)-).))........)).--------- ( -20.80, z-score =  -0.88, R)
>consensus
UACGCACUUUUACUUCUACACCAAGCUUCUCUUCCCGU_CUCGCUGUAUCAGCAAAUGUAUCUCUAAGAUACUUUUGACUUGCACAACUUUCGCC
.............................................(((....((((.(((((.....))))).))))...)))............ ( -8.28 =  -6.86 +  -1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:52 2011