| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,338,209 – 11,338,306 |
| Length | 97 |
| Max. P | 0.936546 |
| Location | 11,338,209 – 11,338,306 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.13 |
| Shannon entropy | 0.38998 |
| G+C content | 0.45432 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -12.78 |
| Energy contribution | -12.68 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11338209 97 + 27905053 ----CUCAUCCUUUAUUGUUUUCCGUGUUCAGUA-GCUGUCUUCUACUCCUGGUCCUCGAGGGUGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- ----....................((((((((.(-(..(....)..)).)))).....((((((((((((((...)))))))))))))).......))))..--- ( -26.50, z-score = -3.43, R) >droEre2.scaffold_4770 10865852 101 + 17746568 CAUGCUCAUCCUUUAUUGUUUUCCUUUCUCAGUA-GCUGUCUGUUUCUCCUGGUCCUCGAGGGUGCGAGUACGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- .............................(((((-.......(..((....))..)..((((((((((((.......))))))))))))........)))))--- ( -20.30, z-score = -1.41, R) >droYak2.chr3R 13742457 97 - 28832112 ----CUCAUCCUUUAUUGUUUUCCAUUCUCAGUA-GCUGUCUUUUUCUCCUGGUCUUCGAGGGUGCGAGUACGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- ----.........................(((((-(..(.((.........)).)..)((((((((((((.......))))))))))))........)))))--- ( -19.80, z-score = -2.28, R) >droSec1.super_0 10513828 97 - 21120651 ----CUCAUCCUUUAUUGUUUUCCGUGUUCAGUA-GCUGUCUUCUACUCGUGGUUCUCGAGGGAGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- ----.........(((((....(((((...((((-(.......)))))))))).....(((((.((((((((...)))))))).)))))...))))).....--- ( -22.30, z-score = -1.23, R) >droSim1.chr3R 17379392 97 - 27517382 ----CUCAUCCUUUAUUGUUUUCCGUGUUCAGUA-GCUGUCUUCUACUCCUGGUCCUCGAGGGUGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- ----....................((((((((.(-(..(....)..)).)))).....((((((((((((((...)))))))))))))).......))))..--- ( -26.50, z-score = -3.43, R) >droAna3.scaffold_13340 15951285 94 + 23697760 ----CUCAUCGUUUAUUGUUUUCCGUUUCCAGCCCGCUGUCUUUUUCUU----UUUCCAGGGGUGCGAGUACGUCGCAUUUGCACCUUCAAUUAAUAUACUG--- ----......((.(((((...........(((....)))..........----......(((((((((((.......)))))))))))....))))).))..--- ( -16.70, z-score = -1.41, R) >dp4.chr2 30330380 78 + 30794189 ----CUCAUCGUUUAUUGUUUUCCGUU----GUCUGCCAC-------------------GGGGUGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUGGCA ----......((.(((((....((((.----(....).))-------------------))(((((((((((...)))))))))))......))))).))..... ( -23.70, z-score = -2.39, R) >droPer1.super_6 5721943 78 + 6141320 ----CUCAUCGUUUAUUGUUUUCCGUU----GUCUGCCAC-------------------GGGGUGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUGGCA ----......((.(((((....((((.----(....).))-------------------))(((((((((((...)))))))))))......))))).))..... ( -23.70, z-score = -2.39, R) >consensus ____CUCAUCCUUUAUUGUUUUCCGUUUUCAGUA_GCUGUCUUCUACUCCUGGUCCUCGAGGGUGCGAGUGCGUCGCAUUUGCACCUUCAAUUAAUAUACUG___ ...........................................................(((((((((((.......)))))))))))................. (-12.78 = -12.68 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:40 2011