| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,318,897 – 11,318,993 |
| Length | 96 |
| Max. P | 0.551926 |
| Location | 11,318,897 – 11,318,993 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 69.73 |
| Shannon entropy | 0.59310 |
| G+C content | 0.34792 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -4.67 |
| Energy contribution | -5.10 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11318897 96 + 27905053 AUUAGUAACUUGCUUCGAGACGAAGCUCCUUUGUUAGCCAAC-CAUGUAGCACCUA---CAUGCA-UGAAUCACUUUCUA--UGAAUUUAUGAAGUAACUAUU ..((((.((((((((((...))))))................-(((((((...)))---))))((-(((((((.......--)).))))))))))).)))).. ( -21.30, z-score = -2.60, R) >droSim1.chr3R 17358091 96 - 27517382 AUUAGUAACUUGCUUCGAGACGAAGCUCCUUUGUUAGCCAAC-CAUGUAGAACCUA---CAUGCA-UGAAUCAUUUUCUA--UGAAUUUAUGAAGUAACUAUU ..((((.((((((((((...))))))................-(((((((...)))---))))((-((((((((.....)--)).))))))))))).)))).. ( -23.40, z-score = -3.71, R) >droSec1.super_0 10494839 96 - 21120651 AUUAGUAACUUGCUUCGAGACGAAGCUCCUUUGUUAGCCAAC-CAUGUAGAACCUA---CAUGCA-UGAACCAUUUUCUA--UGAAUUUAUGAAGUAACUAUU ..((((.((((((((((...))))))................-(((((((...)))---))))((-((((.(((.....)--))..)))))))))).)))).. ( -20.60, z-score = -3.07, R) >droYak2.chr3R 13722492 95 - 28832112 AUUAGUAACU-GCUUCGAGACGAAGCUCCUUUGUUAACCGAC-CAUGUAGAACCUA---CAUGCA-UGAAUCACUUUCUA--UGAAUUUAUGAAGUAACUAUU ..((((.(((-((((((...))))))................-(((((((...)))---))))((-(((((((.......--)).))))))).))).)))).. ( -20.30, z-score = -2.99, R) >droEre2.scaffold_4770 10846108 96 + 17746568 AUUAGUAACUUGCUUCGCGACGAAGCUCCAUUGUUAACCGAC-CAUGUAGAACCUA---CCUACA-UGAAUCCUUUUCUA--UGAAUUUAUGAAGUAACUAUU ..((((.((((((((((...))))))................-(((((((......---.)))))-))............--..........)))).)))).. ( -20.00, z-score = -3.59, R) >droAna3.scaffold_13340 12906406 102 + 23697760 AUUUAUGGGUAGCUUCGUCAAGAAGCUC-UUUGUUAAUCAACGUAUUAGAGAACUAGGUCGUAUAGUGAACUUUUUACUUAUUGAAAUUAUGAAAUAAAGUUU .((((((((.((((((.....)))))))-).......((((.(((..((((.((((.......))))...)))).)))...))))...))))))......... ( -15.90, z-score = 0.46, R) >droVir3.scaffold_13047 5975634 87 - 19223366 --------AUUGUUACUUGGAGCUCCCCCGUUAUUGGG-GGCUGUUGUGUAAAGUA---UCCAUGCCAACUAUCUUAUUAAAAAAAAAAACAAAAUGAA---- --------.(((((......(((((((........)))-))))((((.(((.....---....)))))))..................)))))......---- ( -17.40, z-score = -0.75, R) >consensus AUUAGUAACUUGCUUCGAGACGAAGCUCCUUUGUUAGCCAAC_CAUGUAGAACCUA___CAUGCA_UGAAUCAUUUUCUA__UGAAUUUAUGAAGUAACUAUU ...........(((((.....)))))............................................................................. ( -4.67 = -5.10 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:33 2011