| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,304,587 – 11,304,693 |
| Length | 106 |
| Max. P | 0.893976 |
| Location | 11,304,587 – 11,304,693 |
|---|---|
| Length | 106 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.24 |
| Shannon entropy | 0.46144 |
| G+C content | 0.41926 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11304587 106 - 27905053 ------CUAUUCCGAUUUGGAU---GCCGGCGAUUCACAA-UUCGAUUCCUGCCGCUGAUUGACAGCGGCAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ------.........((((((.---....((((.(((.((-(((((((.(((((((((.....))))))))).))))))))))))...)))).....))))))............. ( -38.10, z-score = -4.70, R) >droSim1.chr3R 17343798 106 + 27517382 ------CUAUUCCGAUUUGGAU---GCCGGCGAUUCACAA-UUCGAUUCCUGCCGCUGAUUGACAGCGGCAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ------.........((((((.---....((((.(((.((-(((((((.(((((((((.....))))))))).))))))))))))...)))).....))))))............. ( -38.10, z-score = -4.70, R) >droSec1.super_0 10475974 106 + 21120651 ------GUAUUCCGAUUUGGAU---GCCGGCGAUUCACAA-UUCGAUUCCUGCCGCUGAUUGACAGCGGCAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ------.........((((((.---....((((.(((.((-(((((((.(((((((((.....))))))))).))))))))))))...)))).....))))))............. ( -38.10, z-score = -4.53, R) >droYak2.chr3R 13707861 115 + 28832112 CGAUUCCGAUUCCGAUUUGGAUGGCGAUGGAGAUUCCCAA-UUCGAUUCCUGCCGCUGAUUGACAGCGGCAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ((..(((((.......)))))...)).(((((((((.(((-(((((((.(((((((((.....))))))))).))))))))........)).)))))))))............... ( -40.90, z-score = -4.02, R) >droEre2.scaffold_4770 10831443 103 - 17746568 ------------CGAUUCCGAUUGGGAUGCCGAUUCCCAA-UUCGAUUCCUGCCGCUGAUUGACAGCGGCAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ------------.((.((.((((((((.......))))))-)).)).))(((((((((.....)))))))))....(((((((((.(((((.(.....)))))).)))))).))). ( -39.70, z-score = -5.37, R) >dp4.chr2 24469792 100 + 30794189 ----------------CUCUCUGUAGCUUUCGUUUGUCGAUUCCGAUUCCUGCCGCUGAUUGACAGCGCACGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAC ----------------...((((.....(((((..(((((...((((((.(((.((((.....))))))).).)))))...)))))....)))))....))))............. ( -23.20, z-score = -1.06, R) >droPer1.super_0 11674463 104 + 11822988 ------------CUCUCUCUCUGUAGCUUUCGUUUGUCGAUUCCGAUUCCUGCCGCUGAUUGACAGCGCACGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAC ------------.(((...((((.....(((((..(((((...((((((.(((.((((.....))))))).).)))))...)))))....)))))....))))....)))...... ( -23.30, z-score = -0.85, R) >droVir3.scaffold_13047 5960877 90 + 19223366 -------------------------UUGACCGAUUCCCAA-UUCGAUUCCUGCCGCUGAUUGACAGCGCACGUAAUUGAGUUUGAUUUUUGCGCACUUUGAAAAUAUAUACAUCUU -------------------------.((.((((.((..((-((((((((.(((.((((.....))))))).).))))))))).))...))).)))..................... ( -15.50, z-score = -0.69, R) >droMoj3.scaffold_6540 23655378 90 + 34148556 -------------------------UGGGCCGAUUCCGAG-UUCAAUUCCUGCCAUUGAUUGACAGCGCACGUAAUUGAGUUUGAUUUUUGCGAAUUUUGAGAAUUUAUACAUCAC -------------------------.((((((....)).)-)))((((((((.((.....)).)))((((...((((......))))..))))........))))).......... ( -12.50, z-score = 1.63, R) >droGri2.scaffold_14906 4427871 91 - 14172833 -------------------------UUGUCCGAUUUUUGAGUUCGAUUCCUGCCGCUGAUUGACAGCGCACGUAAUUGACUUUGAUUUUUGCAAAUUUCGUAAAUUUAGACAUCAG -------------------------.((((.((((...((((.((((((.(((.((((.....))))))).).))))))))).))))(((((.......)))))....)))).... ( -19.10, z-score = -1.01, R) >consensus ____________CGAUUUGGAU___GCUGCCGAUUCCCAA_UUCGAUUCCUGCCGCUGAUUGACAGCGCAAGUAAUUGAGUUUGAUUUUUGCGAAUUUCCAGAAUUUAGACAUCAU ..........................................((((((.(...(((((.....)))))...).))))))((((((.((((..........)))).))))))..... (-11.38 = -11.84 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:32 2011