| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,302,774 – 11,302,877 |
| Length | 103 |
| Max. P | 0.669753 |
| Location | 11,302,774 – 11,302,877 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 84.74 |
| Shannon entropy | 0.21153 |
| G+C content | 0.29944 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -17.97 |
| Energy contribution | -15.43 |
| Covariance contribution | -2.54 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11302774 103 - 27905053 GCUUGUGUAGAUUAUUUAGAUAUAUCUUUAUAUUUGUCGCAUUUCUGAGUAAAGGCUGUCGUGUCAGUUUAUUUACGUCAAAAAAAGAAUUUUUUUUGAUACU ...(((((((((.((..(((....)))..))))))).)))).......(((((.((((......))))...)))))((((((((((....))))))))))... ( -18.70, z-score = -0.93, R) >droSec1.super_0 10474229 99 + 21120651 GCUUGGGUAGAUUAUUUAGAUAUAUCUUUAUAUUUGACUCAUUUCUGAGUAACGAUUGUCGUGUCAGUUUAUUCACGUUAAUAGUUU----ACUACUGAUACU (((..((........(((((((((....)))))))))......))..)))..........((((((((......((.......))..----...)))))))). ( -19.34, z-score = -0.94, R) >droSim1.chr3R 17342006 102 + 27517382 GCUUGGGUAGAUUAUUUAGAUAUAUCUUUAUAUUUGACUCAUUUCUGAGUGACGACUGUCGUUUCAGUUUAUUCACGUUAAUAGUUU-ACUACUACUGAUACU .....(((((((((((((((((((....)))))))))...........((((.(((((......)))))...))))....)))))))-)))............ ( -20.80, z-score = -1.36, R) >consensus GCUUGGGUAGAUUAUUUAGAUAUAUCUUUAUAUUUGACUCAUUUCUGAGUAACGACUGUCGUGUCAGUUUAUUCACGUUAAUAGUUU_A_UACUACUGAUACU ...(((((.((.(((..(((....)))..))).)).)))))....(((((((..((((......))))))))))).((((.((((......)))).))))... (-17.97 = -15.43 + -2.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:31 2011