| Sequence ID | dm3.chr2L |
|---|---|
| Location | 723,731 – 723,847 |
| Length | 116 |
| Max. P | 0.711774 |
| Location | 723,731 – 723,847 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Shannon entropy | 0.30073 |
| G+C content | 0.50301 |
| Mean single sequence MFE | -34.06 |
| Consensus MFE | -25.58 |
| Energy contribution | -25.46 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 723731 116 - 23011544 GCUCGUUGCCCAAUGUCCAACGUCCAGUGUCCAGCGUCCAGUGUCCCUGGCUGCUGGAUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG ........((((((......((.(((((((((((((.((((.....)))).))))))))..(((.(((((((.(((((....))))))).))))).)))...))))))).)))))) ( -41.50, z-score = -2.58, R) >droSim1.chr2L 725317 102 - 22036055 --------------GCUCGUUGCCCAACGUCCAGCGUCCAGUGUCCCUGGCUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG --------------(((.((..(.....(.((((((.((((.....)))).))))))..).(((.(((((((.(((((....))))))).))))).))))..)).)))........ ( -33.10, z-score = -1.42, R) >droSec1.super_14 695603 95 - 2068291 ---------------------GCUCGUUGCCCAACGUCCAGUGUUCCUGACUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG ---------------------........(((((....(((.....))).((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..)))).))))) ( -27.80, z-score = -1.34, R) >droYak2.chr2L 706468 109 - 22324452 -------GCUUGUUGCCCCACGUCCAGCGUCCAUCGUCCGGUGUCCCUGGCUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG -------((.....))((((...((((.(..((((....))))..)))))((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..))))..)))) ( -36.10, z-score = -1.42, R) >droEre2.scaffold_4929 778176 106 - 26641161 -------GCUUGUUGCCCAACGUCCAGCGUCCAUCGUCCAGUGUCCCUG---GCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG -------........((((.((.(((((....((((.((((.....)))---).))))...(((.(((((((.(((((....))))))).))))).)))...)))))))...)))) ( -31.80, z-score = -0.98, R) >consensus _______GC____UGCCCAACGUCCAGCGUCCAGCGUCCAGUGUCCCUGGCUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGG ......................((((..((((.....((((.....))))..((..(.((((((.(((((((.(((((....))))))).))))).))).))))..)))))))))) (-25.58 = -25.46 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:41 2011