Locus 10097

Sequence ID dm3.chr3R
Location 11,271,972 – 11,272,074
Length 102
Max. P 0.935896
window13882 window13883

overview

Window 2

Location 11,271,972 – 11,272,074
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 64.79
Shannon entropy 0.69422
G+C content 0.39441
Mean single sequence MFE -22.48
Consensus MFE -10.18
Energy contribution -10.52
Covariance contribution 0.34
Combinations/Pair 1.40
Mean z-score -1.30
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.40
SVM RNA-class probability 0.935896
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 11271972 102 + 27905053
CAAUGCCGAAUGAUUAACAAAUAAGCGUGUUGUUAAUGCAAACAUUUGAAAUCAGCGAUGCCCCUGCUGAUUGUAAAUGUGAUUUUACACAGGGCAUGAAUG
..(((((...((((((((((.........)))))))).)).(((((((.((((((((.......)))))))).)))))))............)))))..... ( -27.10, z-score =  -2.29, R)
>droEre2.scaffold_4770 10798843 101 + 17746568
CAAUGCCGAGUGAGCACAAAAUAUUUGCGUUGUUAAGGCAAAAAUUUGAAAUCAGCGAUGACGCUGCUGAUUGCCAUUGCGACAU-ACACAAGGCCUAGAAU
....(((..(((.(((.........)))(((((...((((..........(((((((.......)))))))))))...)))))..-.)))..)))....... ( -27.10, z-score =  -1.66, R)
>droYak2.chr3R 13673490 95 - 28832112
CAAUGCCGAGUAAC----AAAUAUUUGUGUUGUUAAUGCGAAAAUUUAAAAUCAGCGAUGACGCUGCUGAUUGCGAUUG--AUUU-ACACAAGGCCUAGAAU
....((((((((..----...)))))((((.((((((.((.........((((((((.......)))))))).))))))--))..-))))..)))....... ( -20.80, z-score =  -1.19, R)
>droSec1.super_0 10443837 94 - 21120651
CAAUGCCGAAUGAU--------AAGAGCGUUGCUAAAGCAAACAUUUGAAAUCAGCGAUGCCCCUGCUGAUUGUAUAUGUGAUUUUACACAGGGCCUGGACG
....(((...((.(--------((((.(.((((....))))((((....((((((((.......))))))))....))))).)))))))...)))....... ( -20.40, z-score =  -0.27, R)
>droSim1.chr3R 17310726 102 - 27517382
CAAUGCCGAAUGAUUAAGAAAUAAGCGUGUUGUUAAUGCAAACAUUUAAAAUCAGCGAUGCCCCUGCUGAUUGUAAAUGUGAUUUUACACAGGGCCUGGACG
....(((...((..(((((.....((((.......))))..(((((((.((((((((.......)))))))).)))))))..)))))..)).)))....... ( -23.90, z-score =  -1.30, R)
>droGri2.scaffold_14906 4389120 85 + 14172833
UAAAGCUGAUACAUCGAUACAAGGGAAUAUCGAUGAUUUGCAUACACGUA-UAAGAAAAGAAUCCUCGGCAUGAAAAUUUCGUUUU----------------
....(((((..((((((((........))))))))...(((......)))-..............)))))................---------------- ( -15.60, z-score =  -1.06, R)
>consensus
CAAUGCCGAAUGAU_AA_AAAUAAGAGUGUUGUUAAUGCAAACAUUUGAAAUCAGCGAUGACCCUGCUGAUUGUAAAUGUGAUUUUACACAGGGCCUGGAAG
....(((......................((((....))))........((((((((.......))))))))....................)))....... (-10.18 = -10.52 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 11,271,972 – 11,272,074
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 64.79
Shannon entropy 0.69422
G+C content 0.39441
Mean single sequence MFE -21.16
Consensus MFE -7.03
Energy contribution -8.53
Covariance contribution 1.50
Combinations/Pair 1.20
Mean z-score -1.48
Structure conservation index 0.33
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.667253
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 11271972 102 - 27905053
CAUUCAUGCCCUGUGUAAAAUCACAUUUACAAUCAGCAGGGGCAUCGCUGAUUUCAAAUGUUUGCAUUAACAACACGCUUAUUUGUUAAUCAUUCGGCAUUG
.....(((((..((((((....((((((..(((((((.((....)))))))))..))))))))))))((((((.........)))))).......))))).. ( -22.90, z-score =  -1.75, R)
>droEre2.scaffold_4770 10798843 101 - 17746568
AUUCUAGGCCUUGUGU-AUGUCGCAAUGGCAAUCAGCAGCGUCAUCGCUGAUUUCAAAUUUUUGCCUUAACAACGCAAAUAUUUUGUGCUCACUCGGCAUUG
.......((((((((.-....))))).)))......(((((....)))))............((((.......(((((.....))))).......))))... ( -24.54, z-score =  -0.99, R)
>droYak2.chr3R 13673490 95 + 28832112
AUUCUAGGCCUUGUGU-AAAU--CAAUCGCAAUCAGCAGCGUCAUCGCUGAUUUUAAAUUUUCGCAUUAACAACACAAAUAUUU----GUUACUCGGCAUUG
.......(((.((((.-((((--.((((((.....))((((....))))))))....)))).)))).((((((.........))----))))...))).... ( -17.20, z-score =  -1.23, R)
>droSec1.super_0 10443837 94 + 21120651
CGUCCAGGCCCUGUGUAAAAUCACAUAUACAAUCAGCAGGGGCAUCGCUGAUUUCAAAUGUUUGCUUUAGCAACGCUCUU--------AUCAUUCGGCAUUG
.((((..((..((((((........))))))....))..))))...(((((........((((((....)))).))....--------.....))))).... ( -22.63, z-score =  -1.29, R)
>droSim1.chr3R 17310726 102 + 27517382
CGUCCAGGCCCUGUGUAAAAUCACAUUUACAAUCAGCAGGGGCAUCGCUGAUUUUAAAUGUUUGCAUUAACAACACGCUUAUUUCUUAAUCAUUCGGCAUUG
.((((..((....((((((......))))))....))..))))...(((((..((((..((..((...........))..))...))))....))))).... ( -21.60, z-score =  -1.33, R)
>droGri2.scaffold_14906 4389120 85 - 14172833
----------------AAAACGAAAUUUUCAUGCCGAGGAUUCUUUUCUUA-UACGUGUAUGCAAAUCAUCGAUAUUCCCUUGUAUCGAUGUAUCAGCUUUA
----------------.....((.((((.(((((((((((......)))).-..)).))))).))))(((((((((......)))))))))..))....... ( -18.10, z-score =  -2.27, R)
>consensus
CGUCCAGGCCCUGUGUAAAAUCACAUUUACAAUCAGCAGGGGCAUCGCUGAUUUCAAAUGUUUGCAUUAACAACACACUUAUUU_UU_AUCAUUCGGCAUUG
.......(((....(((((......)))))(((((((.........)))))))..........................................))).... ( -7.03 =  -8.53 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:25 2011