| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,259,134 – 11,259,232 |
| Length | 98 |
| Max. P | 0.751810 |
| Location | 11,259,134 – 11,259,232 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 93.28 |
| Shannon entropy | 0.11156 |
| G+C content | 0.51602 |
| Mean single sequence MFE | -27.06 |
| Consensus MFE | -25.43 |
| Energy contribution | -24.95 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11259134 98 - 27905053 CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUUCUUC--------GUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCCACUGCCGACGUCGCUGCCACUUC ..............((((((((.....((...........--------))....))))))))((.((((..((.((((..((....))))))))..)))).))... ( -26.10, z-score = -1.23, R) >droEre2.scaffold_4770 10785685 106 - 17746568 CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUGCUUCGUUUCUUCGUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCUUCUGCCGACGUCGCUGCCGCUCC ..............((((((((.....((......))..((......)).....))))))))...((.((((((((((..((....)))))))..))))).))... ( -29.00, z-score = -1.14, R) >droYak2.chr3R 13659853 98 + 28832112 CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUGCUUC--------GUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCCUCUGCCGACGUCGCUGCCGCUUC ..............((((((((.((..((......))..)--------).....))))))))...((.((((((((((..((....)))))))..))))).))... ( -28.80, z-score = -1.34, R) >droSec1.super_0 10431087 98 + 21120651 CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUUCUUC--------GUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCCUCCGUCGACGUCGCUGCCACUUC ..............((((((((.....((...........--------))....))))))))((.((((..((.((((.((....)).))))))..)))).))... ( -25.70, z-score = -1.48, R) >droSim1.chr3R 17296471 98 + 27517382 CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUUCUUC--------GUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCCUCCGUCGACGUCGCUGCCACUUC ..............((((((((.....((...........--------))....))))))))((.((((..((.((((.((....)).))))))..)))).))... ( -25.70, z-score = -1.48, R) >consensus CACGAAUAUUAAUAGGUGAAAGUUGUUGCUUCGUUUCUUC________GUUUUUCUUUCGCCGUCGCAGUAGCCGUCGCUGCCUCUGCCGACGUCGCUGCCACUUC ..............((((((((.....((...................))....))))))))((.((((..((.((((..((....))))))))..)))).))... (-25.43 = -24.95 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:22 2011