| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,503,245 – 7,503,325 |
| Length | 80 |
| Max. P | 0.997766 |
| Location | 7,503,245 – 7,503,325 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 87.43 |
| Shannon entropy | 0.23650 |
| G+C content | 0.38707 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -19.32 |
| Energy contribution | -20.18 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.17 |
| SVM RNA-class probability | 0.997766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7503245 80 + 23011544 ---AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGU--ACAAGUGACUCAUCUAAUAAGG ---...((((((((((.(((.....((((.((....(((......)))....)).))))..--.))).))))).)))))...... ( -22.80, z-score = -3.91, R) >droSim1.chr2L 7298980 80 + 22036055 ---AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGG--ACAAGUGACUCAUCUAAUAAGG ---...((((((((((.(((.....((((.((....(((......)))....)).))))..--.))).))))).)))))...... ( -22.80, z-score = -3.84, R) >droSec1.super_3 3019466 80 + 7220098 ---AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGG--ACAAGUGACUCAUCUAAUAAGG ---...((((((((((.(((.....((((.((....(((......)))....)).))))..--.))).))))).)))))...... ( -22.80, z-score = -3.84, R) >droYak2.chr2L 16931143 80 - 22324452 ---AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGG--ACAAGUGACUCAUCUAAUAAGG ---...((((((((((.(((.....((((.((....(((......)))....)).))))..--.))).))))).)))))...... ( -22.80, z-score = -3.84, R) >droEre2.scaffold_4929 16423756 80 + 26641161 ---AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGG--ACAUGUGACUCAUCUAAUAAGG ---...((((((((((..((.....((((.((....(((......)))....)).))))..--.))..))))).)))))...... ( -19.50, z-score = -2.33, R) >droAna3.scaffold_12916 15439108 78 + 16180835 AACUGUUAGAUAGUUAGAUGGAUAAGCUGUCUAU-------UAGACUGGCUGGGUCAACAACAGCAAGUGACUCAUCUAAUAAGG ...((((((((((((.(((((((.....))))))-------).)))))..(((((((.(........)))))))))))))))... ( -21.90, z-score = -2.17, R) >consensus ___AAAUAGAUAGUUAGUUGGAUAAGCUGUCUGUGGUUGGGUAAACAAAAGAAGUCAGCGG__ACAAGUGACUCAUCUAAUAAGG ......((((((((((.(((.....((((.((....(((......)))....)).)))).....))).))))).)))))...... (-19.32 = -20.18 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:51 2011