| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,225,156 – 11,225,270 |
| Length | 114 |
| Max. P | 0.951999 |
| Location | 11,225,156 – 11,225,270 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 94.75 |
| Shannon entropy | 0.10835 |
| G+C content | 0.57456 |
| Mean single sequence MFE | -48.52 |
| Consensus MFE | -43.21 |
| Energy contribution | -43.07 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.951999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11225156 114 - 27905053 CGUUUGCUUGUUGCUGCGCUGGCUGCACACCACCUUGUGGUUGCAUUGGAUCCGUCUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ......(((..((((((.((((((((.(((((((....))).....(((.((..(.((((((((.....))).))))))..)))))..)))))))))).))))))))...))). ( -46.30, z-score = -1.45, R) >droGri2.scaffold_14906 4336848 114 - 14172833 CGUUUGCUUGUUGCUGCGUUGGCUGCACACCGCCAGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUUGAACCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAAA .......(((.((((((.((((((((.((((....(((((((((.(..((.....))..)))((((......)))).....))))))))))))))))))).)))))).)))... ( -49.60, z-score = -2.76, R) >droMoj3.scaffold_6540 23559224 114 + 34148556 CGUUUGCUUGUUGCUGCGUUGGCUGCACACCGCCAGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUCGAACCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA ......(((..((((((.((((((((.((((....(((((((((.(..((.....))..)))((((......)))).....))))))))))))))))))).))))))...))). ( -49.70, z-score = -2.69, R) >droVir3.scaffold_13047 5869128 114 + 19223366 CGUUUGCUUGUUGCUGCGUUGGCUGCACACCGCCAGGUGGUUGCAUUGGAUCCGUUUUGGGUGGUUGCUUUGAACCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA ......(((..((((((.((((((((.((((.((((((....)).))))..........(((((((..((((...))))..))))))))))))))))))).))))))...))). ( -48.70, z-score = -2.67, R) >droWil1.scaffold_181089 2120528 114 - 12369635 CAUUUGUUUGUUGCUGCGUUGGCUGCACACCACCGGGUGGUUGCAUUGGAUCCGUUUUGGGUGGUUGUUUCGAACCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA ......((((.((((((.((((((((.((((....(((((((...((((((((.....))))((.....))...))))...))))))))))))))))))).)))))).)))).. ( -50.30, z-score = -3.63, R) >droPer1.super_0 10641388 114 - 11822988 CAUUUGCUUGUUGCUGCGUUGGCUGCACACCGCCGGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA ......(((..((((((.((((((((.((((....(((((((.....(....)..(((((((((.....))).))))))..))))))))))))))))))).))))))...))). ( -51.70, z-score = -3.07, R) >dp4.chr2 20950797 114 + 30794189 CAUUUGCUUGUUGCUGCGUUGGCUGCACACCGCCAGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA ......(((..((((((.((((((((.((((....(((((((.....(....)..(((((((((.....))).))))))..))))))))))))))))))).))))))...))). ( -51.70, z-score = -3.37, R) >droAna3.scaffold_13340 12809765 114 - 23697760 CGUUCGCUUGUUGCUGCGCUGGCUGCACACCCCCGGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ...((..(((.((((((.((((((((.((((....(((((((.....(....)..(((((((((.....))).))))))..))))))))))))))))).)))))))).))).)) ( -50.20, z-score = -1.88, R) >droEre2.scaffold_4770 10751241 114 - 17746568 CGUUUGCUUGUUGCUGCGCUGGCUGCACACCACCUUGUGGUUGCAUUGGAUCCGUCUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ......(((..((((((.((((((((.(((((((....))).....(((.((..(.((((((((.....))).))))))..)))))..)))))))))).))))))))...))). ( -46.30, z-score = -1.45, R) >droYak2.chr3R 13625509 114 + 28832112 CGUUUGCUUGUUGCUGCGCUGGCUGCACACCACCUUGUGGUUGCAUUGGAUCCGUCUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ......(((..((((((.((((((((.(((((((....))).....(((.((..(.((((((((.....))).))))))..)))))..)))))))))).))))))))...))). ( -46.30, z-score = -1.45, R) >droSec1.super_0 10397750 114 + 21120651 CGUUUGCUUGUUGCUGCGCUGGCUGCACACCAACUUGUGGUUGCAUUGGAUCCGUCUUAGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ......(((..((((((.((((((((.((((.....((((((...((((....(((..((((....)))).)))))))...)))))).)))))))))).))))))))...))). ( -45.20, z-score = -1.66, R) >droSim1.chr3R 17270846 114 + 27517382 CGUUUGCUUGUUGCUGCGCUGGCUGCACACCACCUUGUGGUUGCAUUGGAUCCGUCUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAGGUAGCACCAGAGA ......(((..((((((.((((((((.(((((((....))).....(((.((..(.((((((((.....))).))))))..)))))..)))))))))).))))))))...))). ( -46.30, z-score = -1.45, R) >consensus CGUUUGCUUGUUGCUGCGCUGGCUGCACACCACCUGGUGGUUGCAUUGGAUCCGUUUUGGGCGGUUGCUUCGACCCAAAUAGACCACCGGUGGCAGCCGAAGUAGCACCAGAGA .......(((.((((((..(((((((.((((.....((((((...((((..((((.....))))..........))))...)))))).)))))))))))..)))))).)))... (-43.21 = -43.07 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:16 2011