| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,222,046 – 11,222,108 |
| Length | 62 |
| Max. P | 0.734307 |
| Location | 11,222,046 – 11,222,108 |
|---|---|
| Length | 62 |
| Sequences | 12 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 98.41 |
| Shannon entropy | 0.03483 |
| G+C content | 0.55242 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -19.64 |
| Energy contribution | -19.73 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11222046 62 - 27905053 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droSim1.chr3R 17267220 62 + 27517382 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droSec1.super_0 10394657 62 + 21120651 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droYak2.chr3R 13622334 62 + 28832112 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droEre2.scaffold_4770 10748141 62 - 17746568 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droAna3.scaffold_13340 12806590 62 - 23697760 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droPer1.super_0 10637511 62 - 11822988 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droWil1.scaffold_181089 2116776 62 - 12369635 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.36, R) >droVir3.scaffold_13047 5865666 62 + 19223366 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGGUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.24, R) >droMoj3.scaffold_6540 23555709 62 + 34148556 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGGUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.24, R) >droGri2.scaffold_14906 4333250 62 - 14172833 AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGGUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. ( -20.30, z-score = -1.24, R) >anoGam1.chr2R 44672465 62 - 62725911 AGUAGUUACCUGCGUUUGGUGAUCGGGGGCAGGGUGACCCAUGUUGUCUAACAGUGUAGGGG ........(((((.((((.....)))).)))))....((((..(((.....)))..).))). ( -19.50, z-score = -1.00, R) >consensus AGUAUUUACCUGCGUUUGGUGAUCGGGGGCAGGAUGGCCCGUGUUGUCUAACAGUGUAGGGG ........((((((((.((..(.((.((((......)))).)))..)).)))...))))).. (-19.64 = -19.73 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:15 2011