| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,209,379 – 11,209,498 |
| Length | 119 |
| Max. P | 0.719815 |
| Location | 11,209,379 – 11,209,498 |
|---|---|
| Length | 119 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.55 |
| Shannon entropy | 0.13444 |
| G+C content | 0.43022 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -24.48 |
| Energy contribution | -24.51 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11209379 119 + 27905053 ACUAGUGGAAUCACUGGCAUUCCACCCCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCACCUAUUUUCAAUCGCAAUG-AACUACGAACAACA ....((((....(((((((.........))))))).....((((..((((((((((((((((...)))))..))))((((.....))))...))).))))...))-))))))........ ( -30.40, z-score = -2.35, R) >droSim1.chr3R 17254414 119 - 27517382 ACUAGUGGAAUCACUGGCAUUCCACCCCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCGACGGCAUUAAGUCAGGUAAACCAGCUAUUUUCAAUCGCAAUG-AACUACGAACAACA ....((((....(((((((.........))))))).....((((..((((((((((((((((...)))))..)))).((....)).......))).))))...))-))))))........ ( -29.10, z-score = -1.41, R) >droSec1.super_0 10382141 119 - 21120651 ACUAGUGGAAUCUCUGGCAUUCCACCCCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCGACGGCAUUAAGUCAGGUAAACCAGCUAUUUUCAAUCGCAAUG-AACUACGAACAACA ....((((.....((((((.........))))))......((((..((((((((((((((((...)))))..)))).((....)).......))).))))...))-))))))........ ( -27.10, z-score = -0.73, R) >droYak2.chr3R 13609456 119 - 28832112 ACUAGUGGAAUCACUGGCAUUCCACCCCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCGACGGCAUUAAGUCAGGUAAACCAGCUAUUUUCAAUCGCAAUG-AACUACGAACAACA ....((((....(((((((.........))))))).....((((..((((((((((((((((...)))))..)))).((....)).......))).))))...))-))))))........ ( -29.10, z-score = -1.41, R) >droEre2.scaffold_4770 10735409 119 + 17746568 ACUAGUGGAAUCACUGGCAUUCCACCCCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCGACGGCAUUAAGUCAGGUAAACCAGCUAUUUUCAAUCGCAAUG-AACUACGAACAACA ....((((....(((((((.........))))))).....((((..((((((((((((((((...)))))..)))).((....)).......))).))))...))-))))))........ ( -29.10, z-score = -1.41, R) >droAna3.scaffold_13340 12793729 119 + 23697760 ACUAGUGGAAUCUCUGGCAUUCCACCUCUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCGACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUCACAAUG-AACUAACAACAGCA ....(((((((..((((((.........)))))).....)))).)))(((((((((((((((...)))))..)))).((....)).......))).)))......-.............. ( -25.50, z-score = -0.97, R) >dp4.chr2 20930148 120 - 30794189 ACUAGUGGCAUCACUGGCAUCCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUCGCAAUGCAUCUAACUACAACA ..((((.((((.(((((((.........)))))))...........((((((((((((((((...)))))..)))).((....)).......))).))))..)))).....))))..... ( -29.00, z-score = -2.07, R) >droPer1.super_0 10620612 120 + 11822988 ACUAGUGGCAUCACUGGCAUCCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUCGCAAUGCAUCUAACUACAACA ..((((.((((.(((((((.........)))))))...........((((((((((((((((...)))))..)))).((....)).......))).))))..)))).....))))..... ( -29.00, z-score = -2.07, R) >droWil1.scaffold_181089 2103435 116 + 12369635 ACUAGUGGAAUCACUGGCAUUCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUUGCAAUG-AACUAACAACA--- ....((((((((....).)))))))((((((((((........)).)).(((((((((((((...)))))..)))).((....)).......))))...))))))-...........--- ( -26.60, z-score = -1.59, R) >droVir3.scaffold_13047 5853837 119 - 19223366 ACUAGUGGAAUAACUGGCAUUCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUUGCAAUG-AACUACAAGCAACA ....(((((((((((((((.........)))))))...))))).)))..(((((((((((((...)))))..)))).((....)).......)))).((((....-........)))).. ( -29.70, z-score = -2.22, R) >droMoj3.scaffold_6540 23543376 119 - 34148556 ACUAGUGGAAUAACUGGCAUUCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUUGCAAUG-AACUACAAGCAACA ....(((((((((((((((.........)))))))...))))).)))..(((((((((((((...)))))..)))).((....)).......)))).((((....-........)))).. ( -29.70, z-score = -2.22, R) >droGri2.scaffold_14906 4320426 119 + 14172833 ACUAGUGGAAUAUCUGGCAUUCCACCAUUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAAUUAUUUUCAAUUGCAAUG-AACUACAAGCAACA ....(((((((((((((((.........))))))...)))))).)))..(((((((((((((...)))))..)))).((....)).......)))).((((....-........)))).. ( -29.10, z-score = -2.00, R) >consensus ACUAGUGGAAUCACUGGCAUUCCACCACUGCCGGUAAAUAUUCACACGAUGAAGGCUAUGCCAACGGCAUUAAGUCAGGUAAACCAACUAUUUUCAAUCGCAAUG_AACUACGAACAACA ....(((((....((((((.........))))))......))))).((((((((((((((((...)))))..)))).((....)).......))).)))).................... (-24.48 = -24.51 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:09 2011