| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,158,887 – 11,158,942 |
| Length | 55 |
| Max. P | 0.670362 |
| Location | 11,158,887 – 11,158,942 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 58.45 |
| Shannon entropy | 0.78043 |
| G+C content | 0.44772 |
| Mean single sequence MFE | -9.33 |
| Consensus MFE | -4.77 |
| Energy contribution | -4.69 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.22 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11158887 55 + 27905053 --------UCUUAUCGAAAUUAGCGGUGCGCAGCCAUAUAAGCAUAAGCACAUCGUAGACGCC --------..............((((((.((.((.......))....)).))))))....... ( -9.40, z-score = 0.23, R) >droEre2.scaffold_4770 10684337 59 + 17746568 ----GAUUAAAUAUCGAAGUUAGCGAUGGGCAGCCAGCGUGCAGUGUGUAUAGCGGAGACUCC ----........((((.......))))(((...((.((((((.....)))).))))...))). ( -9.20, z-score = 1.55, R) >droYak2.chr3R 13558590 53 - 28832112 ----GAUUCAAUAUCGAAGUUAGCGCUGGGCAAUCAGU------UAUGCAUAGCGCAGACACC ----(((.....)))...(((.((((((.(((......------..))).)))))).)))... ( -16.10, z-score = -2.94, R) >droSec1.super_0 10331732 63 - 21120651 UAUAAGAGCAAGAAAGAAAUUAGCGGUGCGCAGCCAUAUAAGCAUAAGCACAUCGUAGACUCC .....((((....((....)).((((((.((.((.......))....)).)))))).).))). ( -10.70, z-score = -0.95, R) >droSim1.chr3R 17202828 63 - 27517382 UAUAAGAGCAAGAAAGAAAUUAGUGGUGCGCAGCCAUAUAAGCAUAAGCACAUCGUAGACUCC .....((((.............(((((.....)))))....((....))........).))). ( -8.60, z-score = -0.14, R) >droGri2.scaffold_15074 5296677 51 - 7742996 -----------GCUUGACAAUAGCUGCCGAUAUUCAUUUAAGACUAAACAU-UCGCACACACU -----------(((.......)))(((.((.....................-)))))...... ( -2.00, z-score = 0.97, R) >consensus ________CAAGAUCGAAAUUAGCGGUGCGCAGCCAUAUAAGCAUAAGCACAUCGUAGACUCC ......................((((((.((................)).))))))....... ( -4.77 = -4.69 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:04 2011