| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,496,229 – 7,496,298 |
| Length | 69 |
| Max. P | 0.630409 |
| Location | 7,496,229 – 7,496,298 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 72.14 |
| Shannon entropy | 0.51211 |
| G+C content | 0.52686 |
| Mean single sequence MFE | -20.46 |
| Consensus MFE | -11.27 |
| Energy contribution | -10.74 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7496229 69 + 23011544 ACCGUAUU-GGCGUGGAGUUUGGCUUUUCGAAUUGCCGCUAACAGAGCGCUGAGCUCCUCACGCGAACGA ..(((..(-.((((((((((..((.....(......)(((.....)))))..))))))..)))).)))). ( -23.20, z-score = -1.06, R) >droSim1.chr2L 7288852 69 + 22036055 ACCGUAUU-GGCGUGGAGUUUGUCUUUUUGAAUUGCCGCUAACAGAGCGCUGAGCUCCUCACGCGAACGA ..(((.((-((((.(.((((((......)))))).)))))))....(((.((((...)))))))..))). ( -19.10, z-score = -0.30, R) >droSec1.super_3 3012621 69 + 7220098 ACCGUAUU-GGCGUGGAGUUUGUCUUUUCGAAUUGCCGCUAACAGAGCGCUGAGCUCCUCACGCGAACGA ..(((.((-((((.(.((((((......)))))).)))))))....(((.((((...)))))))..))). ( -21.20, z-score = -0.75, R) >droYak2.chr2L 16924023 70 - 22324452 ACCGUUUUUGGCGUGGAGUUUAUCUUUUCGAAUUGCCGCUAACGGAGCGCUGAGCUCCACACGCGAACGA ..(((((.((..((((((((((((.....))...((.(((.....))))))))))))))).)).))))). ( -22.90, z-score = -1.46, R) >droEre2.scaffold_4929 16416741 69 + 26641161 ACCGUACU-GGCGUGGAGUUUAUGUUUUCGAAUUGCCGCCAACGGAGCUCUGAGCUCCUCACGCGAACGA ..(((..(-((((.(.(((((........))))).))))))..(((((.....)))))....)))..... ( -22.00, z-score = -1.15, R) >dp4.chr4_group1 4276104 56 + 5278887 --------CGGCGCGAGUUUUUGCUGUUUCAAUUUUU-----CAAAGCGC-GAAACACUCGCACGACCGA --------((((((((((((((((.((((........-----..))))))-)))).))))))..).))). ( -17.40, z-score = -1.60, R) >droPer1.super_5 5878733 56 - 6813705 --------CGGCGCGAGUUUUUGCUGUUUCAAUUUUU-----CAAAGCGC-GAAACACUCGCACGACCGA --------((((((((((((((((.((((........-----..))))))-)))).))))))..).))). ( -17.40, z-score = -1.60, R) >consensus ACCGUAUU_GGCGUGGAGUUUGUCUUUUCGAAUUGCCGCUAACAGAGCGCUGAGCUCCUCACGCGAACGA ..........((((((((((((.(.(((((............))))).).)))))))..)))))...... (-11.27 = -10.74 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:50 2011