| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,120,328 – 11,120,423 |
| Length | 95 |
| Max. P | 0.774875 |
| Location | 11,120,328 – 11,120,423 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 76.80 |
| Shannon entropy | 0.44915 |
| G+C content | 0.42841 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -11.02 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11120328 95 - 27905053 AGCAAACCCCCC-AAAAACGCCCUUAAGCG-----AAGGAAUGAUUGCGUGUUGCUUUGCUGGCUAAAUGCAAUCGAUACUCGCCAUCAAAGUUAAACAAA ............-...(((........(((-----(.(...(((((((((...(((.....)))...)))))))))...))))).......)))....... ( -20.06, z-score = -0.88, R) >droEre2.scaffold_4770 10643962 100 - 17746568 AGCAAACCCCCC-AAAGACGCCCUAAAGCACCGAUAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAA ............-.............(((((((((........)))).)))))((((((.((((..(((((.....))))).)))).))))))........ ( -20.90, z-score = -1.64, R) >droYak2.chr3R 13518961 101 + 28832112 AGCAAACCCCCCAAAAAACGCCCUAAAGCACCGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCAAUACUCGCCAUCAAAGUUAAACAAA .((((..............((......))..((........)).))))((...((((((.((((..(((((.....))))).)))).))))))...))... ( -20.80, z-score = -1.26, R) >droSec1.super_0 10289027 100 + 21120651 AACAAACCCCCA-AAAAACGCCCUAAAGCACAGGAAUCAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAA ............-....(((((((.......)))((((....))))))))(((((((((.((((..(((((.....))))).)))).))))))..)))... ( -23.00, z-score = -2.35, R) >droSim1.chr3R 17171446 100 + 27517382 AACAAACCCCCC-CUAAACGCCCUAAAGCACAGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAA ............-....(((((((.......)))(((......)))))))(((((((((.((((..(((((.....))))).)))).))))))..)))... ( -19.70, z-score = -1.15, R) >droGri2.scaffold_14906 882756 81 - 14172833 ------------CGUCAACCCCCCCAAGCA-----GGCAAAUAAAU--AUGUUUGUUUGCUUGC-GUGUGUAAUCAAUAACAGGAACAAAAAAAAAAACAC ------------...........((..(((-----((((((((((.--...)))))))))))))-((.((....))...)).))................. ( -18.90, z-score = -2.76, R) >consensus AGCAAACCCCCC_AAAAACGCCCUAAAGCAC_GGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAA ................................................((...((((((.((((..(((((.....))))).)))).))))))...))... (-11.02 = -11.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:00 2011