| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,076,412 – 11,076,518 |
| Length | 106 |
| Max. P | 0.845282 |
| Location | 11,076,412 – 11,076,518 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.87 |
| Shannon entropy | 0.51571 |
| G+C content | 0.37172 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.43 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11076412 106 - 27905053 GGACUGCAUGUCGUUGUGUAUGUUACACUUGGCGACACAGGCUCAUGAAAUCGAAAUAAAAUAACUUAGACGAUUUCGUUUUAUCUUUCUGGA---AUAGCUUAUGGUA----------- ..(((...((((((.(((((...)))))...)))))).(((((.(((((((((...(((......)))..)))))))))....(((....)))---..)))))..))).----------- ( -23.90, z-score = -1.00, R) >droEre2.scaffold_4770 10599667 120 - 17746568 GGCCUGCAAGUUGUUCUGGGUGUUACACCUGGAGACAUAGGUAUAUUAAAUAGAGAUAAAAUGACUAGGAAUAAAUGACGAUUAUGUUUUAAAUGUUUAUCUUCCUAGAAUACCCAGAUA ..............((((((((((..(((((......)))))......................(((((((.....((((.(((.....))).))))....))))))))))))))))).. ( -30.60, z-score = -2.36, R) >droSec1.super_0 10245222 95 + 21120651 GGCCUGCAUGUCGUUGUGUAUGUUACACUUGGCGACACAGGCACAUGAAAUCGAAAUAAAAUAACUAAGAUAGAAUAG---------AAUAGA---ACAGCU--UGAUA----------- .(((((..((((((.(((((...)))))...))))))))))).......(((((..........(((........)))---------......---.....)--)))).----------- ( -20.10, z-score = -1.15, R) >droSim1.chr3R 17128491 90 + 27517382 GGCCUGCAUGUCGUUGUGUAUGUUACACUUGGCGACACAGGCACAUGAAAUCGAAAUAAAAUAACUAAG-----AUAG---------AAUAGA---ACAGCU--UGAUA----------- .(((((..((((((.(((((...)))))...)))))))))))...........................-----....---------......---......--.....----------- ( -19.80, z-score = -1.14, R) >consensus GGCCUGCAUGUCGUUGUGUAUGUUACACUUGGCGACACAGGCACAUGAAAUCGAAAUAAAAUAACUAAGA__AAAUAG_________AAUAGA___ACAGCU__UGAUA___________ .(((((..((((((((((((...)))))..)))))))))))).............................................................................. (-12.93 = -13.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:53 2011