| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,069,044 – 11,069,142 |
| Length | 98 |
| Max. P | 0.958206 |
| Location | 11,069,044 – 11,069,142 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 60.66 |
| Shannon entropy | 0.76394 |
| G+C content | 0.43570 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -9.19 |
| Energy contribution | -9.69 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11069044 98 - 27905053 GCAUUAAAAUUAAAUGAU-CAG-ACAUGCACGCAUUUUUGUGUGGUUGUGUGGGGGGGGGGGAAGCCUCACA-UUUUUCCCAAGCUGGAAUAUUCCAGCAA .................(-((.-(((..((((((....))))))..))).)))...(((..(((........-)))..)))..((((((....)))))).. ( -32.40, z-score = -1.99, R) >droGri2.scaffold_14906 824097 83 - 14172833 ----AGUAGGCAAACGAUUACUGGAAUACGCAUACGCGUGUGUGUGUGUGU----------GAUGCGGCAAA-UUUUUUUUUUAAUGGAAUAUUCCAG--- ----..((((.(((.((((.(((.(.(((((((((((....))))))))))----------).).)))..))-)).))).)))).((((....)))).--- ( -20.80, z-score = -0.87, R) >droSim1.chr3R 17120934 92 + 27517382 GCAAUAUAAUUAAAUGAU-CGGAACAUGCACGCAUGUUUGUGUGGUUGCGU-------GGGGAAGCCGCACA-UUUUUCCAAAACUGGAAUAUUCCAGCAA ..................-.((((((((....))))).(((((((((....-------.....)))))))))-....)))....(((((....)))))... ( -25.30, z-score = -1.00, R) >droSec1.super_0 10237913 77 + 21120651 ---------------GAU-CGGAACAUGCACGCAUGUUUGUGUGGUUGCGU-------GGGGAAGCCGCACA-UUUUUCCAAAACUGGAAUAUUCCAGCAA ---------------...-.((((((((....))))).(((((((((....-------.....)))))))))-....)))....(((((....)))))... ( -25.30, z-score = -1.61, R) >droYak2.chr3R 13466968 91 + 28832112 ACGAAAUAAUUAAUUAUUCCAGCA----CAUGCACGCAUGUGUGUGUUUGA-----GUGGGGAAGCCGCACA-UUUUUUCGAAACUGGAAUAUUCCAACCG ..............((((((((..----((.((((((....)))))).)).-----(((((....)).))).-...........))))))))......... ( -25.00, z-score = -1.94, R) >droEre2.scaffold_4770 10592425 96 - 17746568 GCGAAAUAAUUAAUUAUUCCAACAUAUGCAUGCACGCAUGUGUAUGUUUGA-----GUGAGGAAGCCGCACAUUUUUUUCCAAUCUGGAAUAUUCCAGCAA (((......((..((((((.((((((((((((....)))))))))))).))-----))))..))..)))...............(((((....)))))... ( -28.00, z-score = -3.16, R) >droAna3.scaffold_13250 3350030 79 + 3535662 ---------------------GCGUGUUCGAGUAGGUAUGCGUAUGUGUGAGUGCGUCAGGGAAGCCGCAAA-AUUUUCCCCCUCUGGAAUAUUCCAGGAA ---------------------(((..((((.(((.(....).)))...))))..)))..((((((.......-..))))))..((((((....)))))).. ( -22.60, z-score = -1.21, R) >consensus _C__AAUAAUUAAAUGAU_CAGCACAUGCACGCACGUAUGUGUGUGUGUGU_______GGGGAAGCCGCACA_UUUUUCCCAAACUGGAAUAUUCCAGCAA ............................((((((....))))))..............(((((((........)))))))....(((((....)))))... ( -9.19 = -9.69 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:52 2011