| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,495,816 – 7,495,906 |
| Length | 90 |
| Max. P | 0.527155 |
| Location | 7,495,816 – 7,495,906 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 56.89 |
| Shannon entropy | 0.88155 |
| G+C content | 0.37929 |
| Mean single sequence MFE | -12.85 |
| Consensus MFE | -3.60 |
| Energy contribution | -3.73 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7495816 90 + 23011544 GAUGACUAAUA--CGUUAUCCU----UGCUCUAACCACUUUUUCUUCACUUUACUUUCCCCUCUCCAUUUAGAAAUUCAA-AAGUGCAUUAAGGCAA--- ((((((.....--.))))))..----(((..(((.(((((((..(((........................)))....))-)))))..)))..))).--- ( -12.86, z-score = -2.47, R) >droSim1.chr2L 7288441 89 + 22036055 GAUGACUAAUA--CGUUAUCCU----UGCUCUGUCCACUUUUUCUUCACUUUACAUUCGCCUCUC-GUUUGGAAAUUCAA-GAGUGCAUUAAGGCAA--- ((((((.....--.))))))..----(((..((..(((((((......((..((...........-))..))......))-)))))...))..))).--- ( -14.20, z-score = -0.51, R) >droSec1.super_3 3012210 90 + 7220098 GAUGACUAAUA--CGUUAUCCU----UGCUCUGUCCACUUUUUCUUCACUUUAUUCUCCCCUCUCUUUUUGAAAAUUCAA-AAGUGCAUUAGGGCAA--- ((((((.....--.))))))..----(((((((..(((((((..((((.....................)))).....))-)))))...))))))).--- ( -17.50, z-score = -3.33, R) >droYak2.chr2L 16923607 90 - 22324452 GAUGACUAAUA--CGUUAUCCU----UGCUCGGUUCACUUUUUCUUCACUU-AUUUCCACCUCACUAUUUGAAAACUCAA-GAGUGCAUUAAAGGAAA-- ((((((.....--.))))))..----.........................-.(((((....((((.(((((....))))-))))).......)))))-- ( -12.80, z-score = -0.65, R) >droEre2.scaffold_4929 16416333 87 + 26641161 GAUGACUAAUC--CGUUAUCCU----UGCUCCGUCCACUUUUUCUUCACUUUACUUUAAACUCU---UCUCGAAUUUGAA-AAGUGCAGUAAGGCAA--- ((((((.....--.))))))((----((((.....((((((((.(((.................---....)))...)))-))))).))))))....--- ( -14.10, z-score = -1.44, R) >droAna3.scaffold_12916 793789 92 - 16180835 GAUGACUAAGAGACCUUAUCCU----UUUUUCAUGAAAUUCAGUUCCACUUUUCACCUACUUCUC--AAUGGCUUUUCAUUAAAUUCUUUUGAUUAAA-- ..(((.(((((((.........----.......(((((............)))))..........--(((((....)))))....))))))).)))..-- ( -6.80, z-score = 1.17, R) >droWil1.scaffold_180772 3771643 93 - 8906247 GAUGACUAAUC--CUGCGUCCU----UUUACUGCACGAUU-AUUCACACUUUUCUGCCAAAAGUCCUUUUUUCCUUUUGUGCUUUUCACUUUUCUUAUAA ..(((.(((((--.(((((...----...)).))).))))-).))).........((((((((..........)))))).)).................. ( -14.10, z-score = -3.70, R) >droVir3.scaffold_12963 4885639 71 - 20206255 GAUGACUAAUG--CGUUAUCCUGCGCUG--CAGCUCAGCUUUU--GCACAAUACACAUACAACCUUAGUAGCACCUU----------------------- ((((((.....--.))))))....((((--(......((....--))..........((......))))))).....----------------------- ( -11.50, z-score = 0.35, R) >droMoj3.scaffold_6500 14055079 75 - 32352404 GAUGACUAAUG--CGUUAUCCUGCGUUGUGCAGCUAAGCUUUUCGACACAAUACAUACACAACCUUUGCGGCACCUU----------------------- ((((((.....--.))))))((((((((((...........................))))))....))))......----------------------- ( -11.83, z-score = 0.59, R) >consensus GAUGACUAAUA__CGUUAUCCU____UGCUCUGUCCACUUUUUCUUCACUUUACUUUCACCUCUCUAUUUGGAAAUUCAA_AAGUGCAUUAAGGCAA___ ((((((........))))))................................................................................ ( -3.60 = -3.73 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:49 2011