| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,981,470 – 10,981,560 |
| Length | 90 |
| Max. P | 0.513219 |
| Location | 10,981,470 – 10,981,560 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 64.43 |
| Shannon entropy | 0.69428 |
| G+C content | 0.38137 |
| Mean single sequence MFE | -17.32 |
| Consensus MFE | -7.02 |
| Energy contribution | -7.52 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10981470 90 - 27905053 ---CUUCCUUUAUCCCCCGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUUGCCACAAC-----------------AACAAGUGCCAUAAACAGCAUAU ---............((..(((((((.....)))))))..))..((((.(((((((...((((.......-----------------..)))))).))))).)))).... ( -16.10, z-score = -1.33, R) >droPer1.super_3 3716250 89 - 7375914 ---CUCUCACCAUCUCUGGUUGAUUGCCUUUUAAUUAGUUGUAAGCUGAUUAUGCAAAUAAGGCCAUAAA-----------------AACAACAG-CAAGAACUGUGCUU ---...((((((....))).)))..(((((.((((((((.....)))))))).......)))))......-----------------....((((-......)))).... ( -16.20, z-score = -0.03, R) >dp4.chr2 20967356 89 - 30794189 ---CUCUCACCAUCUCUGGUUGAUUGCCUUUUAAUUAGUUGUAAGCUGAUUAUGCAAAUAAGGCCAUAAA-----------------AACAACAG-CAAGAACAGUGCUU ---...((((((....))).)))..(((((.((((((((.....)))))))).......)))))......-----------------......((-((.......)))). ( -15.50, z-score = 0.27, R) >droAna3.scaffold_13340 6070102 105 - 23697760 ---GCAUCUCCAU--GUGGCUGAUUGCCUUUUAAUUAGUUGUAAGCUGCUUAUGCAAAUCAAGCCGCAAAACAAGGGUGCUCAUAGGAAUAACUGCAAUAAACAGCGUAU ---((((((...(--((((((((((((....(((.((((.....)))).))).)).)))).)))))))......))))))..............((........)).... ( -24.40, z-score = 0.20, R) >droEre2.scaffold_4770 10507751 87 - 17746568 ---CUUACUUUAUCCCUCGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUCGAC---AC-----------------AACAAGUGCCAUAAACAGCAUAU ---...............(((((((((....((((((((.....)))))))).))))...)))))---..-----------------.....((((........)))).. ( -16.20, z-score = -1.43, R) >droYak2.chr3R 13383417 87 + 28832112 ---CUUACUUUAUCCCUCGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUUGCC---AC-----------------AACAAGUGCCAUAAACAGCAUAU ---.........(((((.(((((.......))))).))..))).((((.(((((((...((((..---..-----------------..)))))).))))).)))).... ( -16.30, z-score = -1.19, R) >droSec1.super_0 10155200 90 + 21120651 ---CUUCCUUUAUCCCCGGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUUGCCACAAC-----------------AACAAGUGCCAUAAACAGCAUAU ---............((..(((((((.....)))))))..))..((((.(((((((...((((.......-----------------..)))))).))))).)))).... ( -18.40, z-score = -1.42, R) >droSim1.chr3R 17037006 90 + 27517382 ---CCUCCUUUAUCCCCGGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUUGCCACAAC-----------------AACAAGUGCCAUAAACAGCAUAU ---............((..(((((((.....)))))))..))..((((.(((((((...((((.......-----------------..)))))).))))).)))).... ( -18.40, z-score = -1.44, R) >droMoj3.scaffold_6540 3638850 76 - 34148556 GAAAGCUACUUAU-UCUCCUCAGUAGCCUUUUAAUUAUGUGAAAGCUGAUUAUGCAAAUGGGGGAACUUGAAUGCGU--------------------------------- ....((......(-(((((.((...((....((((((.((....)))))))).))...)))))))).......))..--------------------------------- ( -15.92, z-score = -0.64, R) >droWil1.scaffold_181130 9378635 68 + 16660200 --------CAAACGCUGUGUCGAUUGCCUUUUAAUUAGAAGUAAGCUGAUUAUGCAAAUGGCAAUUCACAUGUCUU---------------------------------- --------........((((.(((((((...(((((((.......))))))).......))))))).)))).....---------------------------------- ( -15.80, z-score = -1.49, R) >consensus ___CUUUCUUUAUCCCUGGUUGAUUGCCUUUUAAUUAGUUGGAAGCUGAUUAUGCAAAUCUUGCCACAAC_________________AACAAGUGCCAUAAACAGCAUAU .......................((((....((((((((.....)))))))).))))..................................................... ( -7.02 = -7.52 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:43 2011