| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,962,041 – 10,962,092 |
| Length | 51 |
| Max. P | 0.882650 |
| Location | 10,962,041 – 10,962,092 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.38178 |
| G+C content | 0.49020 |
| Mean single sequence MFE | -12.75 |
| Consensus MFE | -8.89 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10962041 51 + 27905053 GUGGUCGUCGAUUCAAGCGGGCAAGGCUCAGGAUUCGUACGAUAGCAUAGU ((.((((((((.((....((((...))))..)).))).))))).))..... ( -14.90, z-score = -2.14, R) >droMoj3.scaffold_6540 3607440 51 + 34148556 AUUGGUUUGGUAUCAUAAGGGCAAGGUGCGGGAUUUAUCAAAUGACACAUG ....((((((((......(.((...)).)......))))))))........ ( -6.30, z-score = 0.38, R) >droSec1.super_0 10136551 51 - 21120651 GUGGUCGUCGAUUCAAACGGGCAAGGCUCAGGAUUCGUACGAUAGCAUAGU ((.((((((((.((....((((...))))..)).))).))))).))..... ( -14.90, z-score = -2.43, R) >droSim1.chr3R_random 600752 51 + 1307089 GUGGUCGUCGAUUCAAACGGGCAAGGCUCAGGAUUCGUACGAUAGCAUAGU ((.((((((((.((....((((...))))..)).))).))))).))..... ( -14.90, z-score = -2.43, R) >consensus GUGGUCGUCGAUUCAAACGGGCAAGGCUCAGGAUUCGUACGAUAGCAUAGU ((.((((((((.((....((((...))))..)).))).))))).))..... ( -8.89 = -9.07 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:42 2011