| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,961,138 – 10,961,189 |
| Length | 51 |
| Max. P | 0.984286 |
| Location | 10,961,138 – 10,961,189 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.05402 |
| G+C content | 0.30065 |
| Mean single sequence MFE | -8.60 |
| Consensus MFE | -8.57 |
| Energy contribution | -8.57 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10961138 51 - 27905053 ACAUUGAGUAUCUGCUUAACGAACUUAUCGAAGAGAUAAGGAUAAAAAAUG .(.((((((....)))))).)..((((((.....))))))........... ( -9.40, z-score = -2.50, R) >droSec1.super_0 10135597 51 + 21120651 ACAUUGUAUAUCUGCUUAACGAACUUAUCGAAGAGAUUAGGAUAAAAAAUG .((((...(((((.(((..(((.....)))..)))....)))))...)))) ( -8.20, z-score = -1.98, R) >droSim1.chr3R_random 599822 51 - 1307089 ACAUUGUAUAUCUGCUUAACGAACUUAUCGAAGAGAUUAGGAUAAAAAAUG .((((...(((((.(((..(((.....)))..)))....)))))...)))) ( -8.20, z-score = -1.98, R) >consensus ACAUUGUAUAUCUGCUUAACGAACUUAUCGAAGAGAUUAGGAUAAAAAAUG .((((...(((((.(((..(((.....)))..)))....)))))...)))) ( -8.57 = -8.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:41 2011