| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,942,546 – 10,942,603 |
| Length | 57 |
| Max. P | 0.583002 |
| Location | 10,942,546 – 10,942,603 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 85.34 |
| Shannon entropy | 0.23376 |
| G+C content | 0.43882 |
| Mean single sequence MFE | -15.67 |
| Consensus MFE | -11.81 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.583002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10942546 57 - 27905053 AUUCCCGUUUGGCUAAGGAGCUC--UUACAGCUACAAAGCGAUGGGAAAUGCAAAUAUU .((((((((..(((....((((.--....))))....)))))))))))........... ( -16.30, z-score = -2.17, R) >droEre2.scaffold_4770 10470959 57 - 17746568 AUUCUCGUUCUACUGAGAAGCUG--UAACAGCUACAAAGAGCUGGGAAAUGCAAAUAUU .((((((......))))))((..--(..(((((......)))))..)...))....... ( -14.60, z-score = -2.12, R) >droSec1.super_0 10119739 57 + 21120651 AUUCCCGUCUGGCUGAGGAGCUC--UUACAGCUACAAAGCGAUGCGAAAUGCACAUAUU .(((.(((((((((((((....)--)).))))))......)))).)))........... ( -12.20, z-score = -0.20, R) >droSim1.chr3R 17000360 59 + 27517382 AUUCCCGCUUGGCUGAGGAGCUCAGCUACAGCUACAAAGCGAUGGGAAAUGCAAAUAUU .((((((..((((((((...))))))))..(((....)))..))))))........... ( -19.60, z-score = -2.21, R) >consensus AUUCCCGUUUGGCUGAGGAGCUC__UUACAGCUACAAAGCGAUGGGAAAUGCAAAUAUU .((((((((..(((....((((.......))))....)))))))))))........... (-11.81 = -12.50 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:40 2011