| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,937,656 – 10,937,749 |
| Length | 93 |
| Max. P | 0.747603 |
| Location | 10,937,656 – 10,937,749 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 70.94 |
| Shannon entropy | 0.56323 |
| G+C content | 0.52396 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.41 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747603 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 10937656 93 + 27905053 ---------GCAUGGACAACAGAGCCAUUUGUUGUCGGCAAUGUUGUCAAUUGAGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGGGGUUGGAUGUUGCU ---------(((((..((((.(((((.((((((...((((....)))).(((((.((((......)))).))))))))))))))))...))))..)).))). ( -33.20, z-score = -2.45, R) >droSim1.chr3R 16995439 93 - 27517382 ---------GCAUGGACAACAGAGCCAUUUGUUGUCGGCAGCGUUGUCAAUUGAGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGUGCUUGGAUGUUGCU ---------.....(((((((((....)))))))))(((((((((....(((((.((((......)))).)))))..((((.(....).))))))))))))) ( -35.50, z-score = -2.29, R) >droSec1.super_0 10114864 93 - 21120651 ---------GCAUGGACAACAGAGCCAUUUGUUGUCGGCAGCGUUGUCAAUUGAGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGGGCUUGGAUGUUGCU ---------.....(((((((((....)))))))))(((((((((((..(((((.((((......)))).))))).))..((((....)))).))))))))) ( -34.80, z-score = -2.14, R) >droYak2.chr3R 13341481 93 - 28832112 ---------GCAUGGACAACAGAGCCAUUUGUUGUCGGCAGCGUUGUCAAUUGAGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGGGCUUGGAUGUUGCU ---------.....(((((((((....)))))))))(((((((((((..(((((.((((......)))).))))).))..((((....)))).))))))))) ( -34.80, z-score = -2.14, R) >droEre2.scaffold_4770 10465951 93 + 17746568 ---------GCAUGGACAACAGAGCCAUUUGUUGUCGGCAGCGUUGUCAAUUGAGGAGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGGGCUUGGACGUUGCU ---------.....(((((((((....)))))))))((((((((..((.........))..))(((((.(((...(((....)))..))).))))))))))) ( -31.90, z-score = -1.46, R) >droAna3.scaffold_13340 6005009 87 + 23697760 ---------GCGUGGGCGAUGGAGCCAUUUGUUGUAGGCAAAGUUGUCAAUUGUGGGGACGAUGUACGUGUCAGUAGCAAGGGCUUUGACUGGGCG------ ---------((.(((....(..((((.(((((((..((((..((((((.........)))))).....))))..)))))))))))..).))).)).------ ( -27.70, z-score = -1.39, R) >dp4.chr2 20914303 80 + 30794189 ------GUGUGGGGGGCGUUGGUGCCAUUUGUUGUGGGCAACGUUGUCAAUUGUGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUU---------------- ------......(((.(.(((.(((....((.(..(((((.((((((((....)))))))).)))))..).))))).))).).)))---------------- ( -22.50, z-score = -0.38, R) >droPer1.super_3 3665560 80 + 7375914 ------GUGUGGGGGGCGUUGGUGCCAUUUGUUGUGGGCAACGUUGUCAAUUGUGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUU---------------- ------......(((.(.(((.(((....((.(..(((((.((((((((....)))))))).)))))..).))))).))).).)))---------------- ( -22.50, z-score = -0.38, R) >droWil1.scaffold_181130 9331463 84 - 16660200 ------GCAUGAUGGGUAAUGGAGCCAUUAGAUUUGGGCAGCGUUGUCAAUUGUGGUGAUGAUGUUCUUGUCAGUAGCAAAGGCUUGGAC------------ ------((.((((((.(.....).))))))(((..(((((.(((..(((....)))..))).)))))..)))....))............------------ ( -22.30, z-score = -0.77, R) >droVir3.scaffold_13047 7620608 86 + 19223366 GCGUAGGCGUUGGCGUUGGCGCCGCCAUUUAGCAUCGGCAACGUCGUCAGCUGGGGCGAUGAUGUUCUUGUCAGUAGCAGAGGUUU---------------- ((...((((..((((((..((((.(((.((..(..((....))..)..)).)))))))..))))))..))))....))........---------------- ( -29.20, z-score = -0.10, R) >droGri2.scaffold_14830 3469103 83 + 6267026 GUGUAGGCGUUG---UUGGCGCCACCAUUCAACGUUGGCAGCGUCGUCAAUUGUGGCGAUGAUGUUCGUGUCAGUAGCAGCGGCUU---------------- ....((.(((((---(((((((..(((........)))((.((((((((....)))))))).))...))))))...)))))).)).---------------- ( -28.40, z-score = -0.51, R) >consensus _________GCAUGGACAACGGAGCCAUUUGUUGUCGGCAGCGUUGUCAAUUGAGGCGAUGAUGUUCGUGUCAGUAGCAAGGGCUUGGGCU_GG________ .......................(((.((((.((..((((((((((((.........))))))))...))))..)).))))))).................. (-14.48 = -14.41 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:39 2011