Locus 1006

Sequence ID	dm3.chr2L
Location	7,495,506 – 7,495,611
Length	105
Max. P	0.943252

overview

Window 3

Location	7,495,506 – 7,495,611
Length	105
Sequences	14
Columns	105
Reading direction	forward
Mean pairwise identity	80.46
Shannon entropy	0.44217
G+C content	0.52993
Mean single sequence MFE	-30.66
Consensus MFE	-11.43
Energy contribution	-11.32
Covariance contribution	-0.10
Combinations/Pair	1.62
Mean z-score	-2.93
Structure conservation index	0.37
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.49
SVM RNA-class probability	0.943252
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 7495506 105 + 23011544
ACUUACCAAAACCGCGCUCUCUCGCACCAGCUGAGAGACAUUCUCUCUCAUUUGCACCGCUGAGCCGAGCUUAUUUAAGCCGCGCGUAAACUUUCGCUCCAUCCU
.............((((((...((...(((.(((((((.....))))))).)))...))..)))).(.((((....)))))))(((........)))........ ( -25.70, z-score =  -2.05, R)
>droSim1.chr2L 7288126 105 + 22036055
ACUUACCAAAACCGCGCUCUCUCGCACCAGCUGAGAGACAUUCUCUCUCAUUUGCACCGCUGAGCCGAGCUUAUUUAAGCCGCGCGUAAACUUUCGCUCCAUCCU
.............((((((...((...(((.(((((((.....))))))).)))...))..)))).(.((((....)))))))(((........)))........ ( -25.70, z-score =  -2.05, R)
>droSec1.super_3 3011895 105 + 7220098
ACUUACCAAAACCGCGCUCUCUCGCACCAGCUGAGAGACAUUCUCUCUCAUUUGCACCGCUGAGCCGAGCUUAUUUAAGCCGCGCGUAAACUUUCGCUCCAUCCU
.............((((((...((...(((.(((((((.....))))))).)))...))..)))).(.((((....)))))))(((........)))........ ( -25.70, z-score =  -2.05, R)
>droYak2.chr2L 16923308 105 - 22324452
GCUUACCAAAAUCGCGCUCUCGCGCACCAGCUGAGAGACAUUCUCUCGCAUUUGCACCGCUGAGCCGAGCUUGUUUAAGCCGCGCGUAAACUUUCGCUCCAUCCU
(((..........((((....))))..((((.(((((.....)))))((....))...))))))).((((..(((((.((...)).)))))....))))...... ( -32.00, z-score =  -1.93, R)
>droEre2.scaffold_4929 16416033 105 + 26641161
ACUUACCAAAACCGCGCUCUCCCGCACCAGCUGAGAGACAUUCUCUCUCAUUUGCACCGCAGAGCCGAGCUUAUUUAAGCCGCGCGUAAAUUUCCGUUCCAUCCU
..........((((((((((..((...(((.(((((((.....))))))).)))...)).))))).(.((((....)))))))).)).................. ( -25.50, z-score =  -2.75, R)
>droAna3.scaffold_12916 793508 105 - 16180835
ACUUACCAAAACAGCGCUCUCACGCACCAACUGGGACACGUUCUCUCUCAUUUGAACCGCCGAGCCGAGCUUAUUCAAGCCGCGUGUGAAUUUUCUCUCCAUCCU
.................((.(((((.....((.((....((((..........))))..)).))..(.((((....)))))))))).))................ ( -19.60, z-score =  -0.25, R)
>dp4.chr4_group1 4275363 105 + 5278887
ACUUACCAAAACGGCACUCUCACGCACCAGCUGAGAGACAUUCUCUCUCAUCUGGCCCGCCGAAGUUAGCUUAUUCAAGCCGCGCGUAAAUUUACGCUCCAUUCU
...........((((.......((..((((.(((((((.....))))))).))))..))...(((....)))......)))).(((((....)))))........ ( -29.80, z-score =  -3.72, R)
>droPer1.super_5 5877989 105 - 6813705
ACUUACCAAAACGGCACUCUCACGCACCAGCUGAGAGACAUUCUCUCUCAUCUGGCCCGCCGAAGUUAGCUUAUUCAAGCCGCGCGUAAAUUUACGCUCCAUUCU
...........((((.......((..((((.(((((((.....))))))).))))..))...(((....)))......)))).(((((....)))))........ ( -29.80, z-score =  -3.72, R)
>droWil1.scaffold_180772 3771316 105 - 8906247
ACUUACCAAAACUGCGCUCUCACGCACCAGCUGAGAGACACUCUCUCUCAUUUGGACAGCAGAGCUGUGCUUAUUCAAGCCCCGCGUAAAUUUACGCUCCAUUUU
............((((......))))((((.(((((((.....))))))).))))(((((...)))))((((....))))...(((((....)))))........ ( -29.80, z-score =  -3.39, R)
>droVir3.scaffold_12963 4885308 105 - 20206255
ACUUACCAAAACUGCGCUCUCACGCACCACCUGAGAGACGCUCUCUCUCAGCUGUGCGGCCAUGCCCGGCUUAUUCAAGCCGCGCGUGAAUUUACGCUCCAUUCU
.............(((......(((((...((((((((.....))))))))..)))))..(((((.((((((....)))))).)))))......)))........ ( -39.10, z-score =  -5.13, R)
>droMoj3.scaffold_6500 14054763 105 - 32352404
ACUUACCAAAACGGCGCUCUCACGCACCACCUGAGAGACGCUCUCUCUCAGCUGUGCCGCCAUGCCCGGCUUAUUCAAGCCGCGCGUGAAUUUACGCUCCAUUCU
............((.((......((((...((((((((.....))))))))..))))...(((((.((((((....)))))).))))).......)).))..... ( -38.30, z-score =  -4.89, R)
>droGri2.scaffold_15126 4105310 105 + 8399593
ACUUACCAAAACUGCGCUCUCACGCACAACCUGAGAGACGCUCUCUCUCAGCUGUGCGGCCAUGCCGGGCUUAUUCAAGCCCCGCGUGAAUUUACGCUCCAUUCU
.............(((......((((((..((((((((.....)))))))).))))))..(((((.((((((....)))))).)))))......)))........ ( -41.50, z-score =  -5.93, R)
>anoGam1.chr3R 12490126 105 + 53272125
ACAUACAAGUGAGGUGGAUUCACGUACAACUUGCGAGAUGUUUUCCCUCAGCUGUGCCGCCAUGCCGGGCUUGUUAAGCCCGCGGGUGAACUUCCGCUCGGUCAU
...((((..(((((..((.((.((((.....)))).))...))..)))))..)))).....((((((((((.....)))))(((((......)))))..)).))) ( -35.50, z-score =  -0.84, R)
>apiMel3.Group1 2407560 105 - 25854376
ACCUACCUGUACCGUACUUUCACGUACUACCUGAGAGACAGUCUCUCGUAAUUGAGCGGCCAUACCCGGUUUACCCAGGCCGCGGGUAAACUUCCUUUCGCUCAU
.........(((.((((......)))).....(((((.....))))))))..(((((((........(((((((((.......))))))))).....))))))). ( -31.22, z-score =  -2.37, R)
>consensus
ACUUACCAAAACCGCGCUCUCACGCACCAGCUGAGAGACAUUCUCUCUCAUUUGCACCGCCGAGCCGAGCUUAUUCAAGCCGCGCGUAAAUUUACGCUCCAUCCU
.......................((.......(((((.....)))))...........(((......)))...........))(((........)))........ (-11.43 = -11.32 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:48 2011