| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,917,772 – 10,917,865 |
| Length | 93 |
| Max. P | 0.732744 |
| Location | 10,917,772 – 10,917,865 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 97.74 |
| Shannon entropy | 0.04071 |
| G+C content | 0.52373 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -31.66 |
| Energy contribution | -31.50 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -0.97 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10917772 93 - 27905053 AGUGUGCCCCGAAAUAGCAUUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUAUGG (((((((((((..((((......)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). ( -30.80, z-score = -0.80, R) >droSim1.chr3R 16982753 93 + 27517382 AGUGUGCCCCGAAAUAGCAUUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGG (((((((((((..((((......)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). ( -31.20, z-score = -0.73, R) >droSec1.super_0 10102460 93 + 21120651 AGUGUGCCCCGAAAUAGCAUUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGG (((((((((((..((((......)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). ( -31.20, z-score = -0.73, R) >droYak2.chr3R 13328532 93 + 28832112 AGUGUGCCCCAAAAUAGCUUUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUGAGCCUAUGGAGCUGUGG (((((((((((..((((......)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). ( -32.50, z-score = -1.42, R) >droEre2.scaffold_4770 10452799 92 - 17746568 AGUGUGCCCCGAAAUAGC-UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUGAGCCUAUGGAGCUGUGG (((((((((((..((((.-....)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). ( -31.60, z-score = -1.19, R) >consensus AGUGUGCCCCGAAAUAGCAUUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGG (((((((((((..((((......)))).))))..)).)))))((..((((((...((..((((.(....).))))..))...))))))..)). (-31.66 = -31.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:37 2011