| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,885,316 – 10,885,368 |
| Length | 52 |
| Max. P | 0.586676 |
| Location | 10,885,316 – 10,885,368 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 91.03 |
| Shannon entropy | 0.12362 |
| G+C content | 0.42949 |
| Mean single sequence MFE | -10.53 |
| Consensus MFE | -9.47 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10885316 52 - 27905053 CGCAGAGCAUAUACAAUUAUGCGCGCACUGCGGAAAAAUCCUUGAACAGUCA .((((.(((((......))))).....))))(((....)))........... ( -12.20, z-score = -1.19, R) >droEre2.scaffold_4770 10418696 52 - 17746568 CGCAGAGCAUAUACAAUUAUGCAGGCACUGCUAAAAAAUCCUUGAACAACCA .((((.(((((......))))).....))))..................... ( -8.70, z-score = -1.13, R) >droYak2.chr3R 13295891 52 + 28832112 CGCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCCUUUAACAGCCA (((((.(((((......))))).....))))).................... ( -10.70, z-score = -1.67, R) >consensus CGCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCCUUGAACAGCCA (((((.(((((......))))).....))))).................... ( -9.47 = -9.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:31 2011