| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,850,740 – 10,850,847 |
| Length | 107 |
| Max. P | 0.656043 |
| Location | 10,850,740 – 10,850,847 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Shannon entropy | 0.13496 |
| G+C content | 0.53455 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -20.62 |
| Energy contribution | -20.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10850740 107 + 27905053 GCCGUGUCAAUGUCCUGCGUCCUUUCACCGCUCGCUCCCUCUCACACACCCACACACACACAGAUACAAUCCCACUCUGCCGAAUGUGUGUGGUUGUGGCCUUUAUU ((((((.....((...(((.........)))..)).......)))(((.(((((((((..((((...........)))).....))))))))).))))))....... ( -27.10, z-score = -2.17, R) >droSec1.super_0 10034260 95 - 21120651 GCCGUGUCAAUGUCCUGCGUCCUUCCACCGCUCGCUCCC------------ACACACACACAGAUACAAUCCCAUUCUGCCGAAUGUGUGUGGUUGUGGCCUUUAUU ((.(((...(((.....))).....))).))((((..((------------(((((((..((((...........)))).....)))))))))..))))........ ( -24.30, z-score = -1.60, R) >droSim1.chr3R 16911699 101 - 27517382 GCCGUGUCAAUGUCCUGCGUCCUUCCACCGCUCGCUCCCUCACAC------ACACACAUACAGAUACAAUCCCAUUCUGCCGAAUGUGUGUGGUUGUGGCCUUUAUU ((((((.....((...(((.........)))..)).....))).(------((((((((.((((...........))))....))))))))).....)))....... ( -25.40, z-score = -1.86, R) >consensus GCCGUGUCAAUGUCCUGCGUCCUUCCACCGCUCGCUCCCUC_CAC______ACACACACACAGAUACAAUCCCAUUCUGCCGAAUGUGUGUGGUUGUGGCCUUUAUU ((((...((((.....(((..(.......)..))).................((((((((((((...........)))).....))))))))))))))))....... (-20.62 = -20.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:26 2011