| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,486,291 – 7,486,348 |
| Length | 57 |
| Max. P | 0.984592 |
| Location | 7,486,291 – 7,486,348 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 65.44 |
| Shannon entropy | 0.58088 |
| G+C content | 0.37565 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -3.94 |
| Energy contribution | -4.38 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.984592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7486291 57 - 23011544 -------ACACAUAUUAAUCGUAUUAGAUAUACAAGGCGAAAGCCCAGAAAUUCCGAACGAAAU- -------...........((((.(..((.......(((....))).......))..)))))...- ( -11.44, z-score = -4.19, R) >droAna3.scaffold_12916 784265 65 + 16180835 AUUUACAAAGCCAAACAUUUGAGCUUCAAAGGAGGGGGUAUAGCCUAGAAAUAUUUAAUAGAUAG (((((..(((((((....))).)))).........(((.....)))............))))).. ( -6.30, z-score = 1.01, R) >droEre2.scaffold_4929 16406508 54 - 26641161 ---------AAGUAUUAAUGGUACCAGAUAUACAUGGCGAAAG-CCAGAAAUGCCGAAGGAAAU- ---------..((((...((....))...)))).((((....)-))).................- ( -13.30, z-score = -3.43, R) >droSec1.super_3 3002729 55 - 7220098 ---------ACAUAUUAAUCGUAUUAGAUACACAAGGCGAAAGCCCAGAAAUGCCGAACGAAAU- ---------.........((((.............(((....)))((....))....))))...- ( -11.10, z-score = -3.58, R) >droSim1.chr2L 7278945 55 - 22036055 ---------ACAUAUUAAUCGUAUUAGAUACCCAGGGCGAAAGCCCAGAAAUGCCGAACGAAAU- ---------.........((((.(..(.......((((....)))).......)..)))))...- ( -13.44, z-score = -3.59, R) >consensus _________ACAUAUUAAUCGUAUUAGAUACACAAGGCGAAAGCCCAGAAAUGCCGAACGAAAU_ ..................((((.............(((....)))((....))....)))).... ( -3.94 = -4.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:47 2011