| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,816,811 – 10,816,901 |
| Length | 90 |
| Max. P | 0.957924 |
| Location | 10,816,811 – 10,816,901 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.45416 |
| G+C content | 0.48148 |
| Mean single sequence MFE | -25.39 |
| Consensus MFE | -11.13 |
| Energy contribution | -11.13 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10816811 90 + 27905053 AGCUGGGAUGGGGUCAUUACAGGAAGUACUGGACAGUGGAG-------CGGAAAAAACUGGAUGUCCAGAGUGAAAACAGGACCUCGAUAUAAAAGG ........(((((((.............(((((((......-------(((......)))..))))))).((....))..))))))).......... ( -23.10, z-score = -1.90, R) >droAna3.scaffold_13340 5898222 90 + 23697760 -------AGCGGGUCAUUACAGGAAGUACAGGACUGCGAUGGCUGGCCCAGCAACGAACAGUGUUUGGACCUCAAAAGAGGGUUGGAAAACAGAAAA -------.((.((((((..(((...........)))..)))))).))(((((..(((((...)))))..((((....)))))))))........... ( -30.00, z-score = -2.75, R) >droEre2.scaffold_4770 10353859 90 + 17746568 AGCUUGGAUGGGGUCAUUACAGGAAGUACUGAACGGACGGG-------CGGAAAAAACUGGCUGUCCAGAAUGAAAACAGGACCUCGAUAUAAAAGG ........(((((((....(((......)))...((((((.-------(((......))).)))))).............))))))).......... ( -28.10, z-score = -3.68, R) >droYak2.chr3R 13224104 90 - 28832112 UGCUUGGAUGGGGUCAUUACAGGAAGUACUGAACGGACGGG-------CGGAAAAAACUGACUGUCCACACUGAAAACAGGACCUCGAUAUAAAAGG ........(((((((....(((......)))...((((((.-------(((......))).))))))...(((....)))))))))).......... ( -26.70, z-score = -3.25, R) >droSec1.super_0 10000654 90 - 21120651 AGCUGGGAUGGGGUCAUUACAGGAAGUACUGGACGGAAGAG-------CGGAAAAAACUGGCAGUCCAGUGUAAAAACAGGACUGCGAUAUAAAAGG ..(((..(((....)))..)))......(((..(....)..-------))).........(((((((.((......)).)))))))........... ( -23.30, z-score = -2.71, R) >droSim1.chr3R 16875816 90 - 27517382 AGCUGGGAUGGGGUCAUUACAGGAAGUACUGGACGGAAGAG-------CGGAAAAAACUGGCAGUCCAGUGUAAAAACAGGACCUCGAUAUAAAAGG ........(((((((...........((((((((....(..-------(((......))).).)))))))).........))))))).......... ( -21.15, z-score = -1.28, R) >consensus AGCUGGGAUGGGGUCAUUACAGGAAGUACUGGACGGAAGAG_______CGGAAAAAACUGGCUGUCCAGAGUGAAAACAGGACCUCGAUAUAAAAGG .........((((((....(((......)))..........................((((....))))...........))))))........... (-11.13 = -11.13 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:17 2011