| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,784,453 – 10,784,546 |
| Length | 93 |
| Max. P | 0.641583 |
| Location | 10,784,453 – 10,784,546 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 65.64 |
| Shannon entropy | 0.64660 |
| G+C content | 0.43580 |
| Mean single sequence MFE | -18.96 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.11 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.35 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10784453 93 + 27905053 UUUAACAGGACUUUCAGAAAUCACUUAUUUUGUUGGUUGGCCAACGAAGCUUGGCAGCACAAUACACGGCAUCCAAAUGCUUUGUGAGUGUGU .....((((.((((..(((((.....)))))(((((....)))))))))))))...(((((.((((.(((((....))))).))))..))))) ( -24.20, z-score = -0.88, R) >dp4.chr2 20736644 72 + 30794189 --------------UGCGAUUGGACACUUUUGUCGGCUGGCUUCUAAAAC-UUGCCACACAACAACCGGCACACAAAUGCUUUGUGU------ --------------..((.(((((((....))))(..((((.........-..))))..)..))).))..((((((.....))))))------ ( -15.40, z-score = -0.15, R) >droPer1.super_3 3488239 72 + 7375914 --------------CGCGAUUGCACACUUUUGUCGGCAGGCUUCUAAAAC-UUGCCACACAACAACCGACACACAAAUGCUUUGUGU------ --------------(((((..(((......((((((..(((.........-..))).........))))))......))).))))).------ ( -15.50, z-score = -0.71, R) >droAna3.scaffold_13340 5866360 73 + 23697760 -------------UUCAAACCUUUAAACUUUGUCUGGUGGUAGAGGAAAG-UGCCAACACAACACCCGGCACACAAAUGCUUUGUGU------ -------------......((((((.(((......)))..))))))...(-((....))).((((..((((......))))..))))------ ( -16.20, z-score = 0.07, R) >droEre2.scaffold_4770 10321838 87 + 17746568 UUCAACAGCACUUUCAGAAACCACUUAUUUUGUUGGUUGGCCAACGAAGCUUGGCAGCACAAUACACGGCAUCCAAAUGCUCUGUGU------ .......(((((..(((((........)))))..)))..(((((......))))).))...(((((.(((((....))))).)))))------ ( -20.40, z-score = -0.48, R) >droYak2.chr3R 13191534 89 - 28832112 UUCAACAGGACUUUAAGAAAUCACUUAUUUUGUUGGUUGGCCAACGAAGUCUGCCAGCACAAUAGACGGCAUCCAAAUGUUUUGUGGGU---- .((.(((((((.....((........((((((((((....)))))))))).((((..(......)..)))))).....))))))).)).---- ( -21.30, z-score = -0.64, R) >droSec1.super_0 9969385 89 - 21120651 UUGAACAGGACUUUCAGAAAUCACUUAUUUUGUUGGUUGGCCAACGAUGCUUGGCAGCACAAUACACGGCAUCCAAAUGCUUUGUGAGU---- (((.....((((..(((((........)))))..)))).(((((......)))))....)))((((.(((((....))))).))))...---- ( -19.30, z-score = 0.22, R) >droSim1.chr3R 16843084 89 - 27517382 UUGAAUUGGACUUUCAGAAAUCACUUAUUUUGUUGGUUGGCCAACGAUGCUUUGCAGUACAAUACACGGCAUCCAAAUGCUUUGUGAGU---- (((((.......)))))...((((.......(((((....)))))((((((.((..........)).))))))..........))))..---- ( -19.40, z-score = -0.21, R) >consensus UU_AACAGGACUUUCAGAAAUCACUUAUUUUGUUGGUUGGCCAACGAAGCUUGGCAGCACAAUACACGGCAUCCAAAUGCUUUGUGU______ ...........................(((((((((....)))))))))........(((((.....((((......)))))))))....... (-11.20 = -11.11 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:12 2011