| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,470,139 – 7,470,234 |
| Length | 95 |
| Max. P | 0.887333 |
| Location | 7,470,139 – 7,470,234 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 68.19 |
| Shannon entropy | 0.61796 |
| G+C content | 0.41520 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -11.37 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7470139 95 - 23011544 --UGCUCUUCCUAUUUGAAGCACUACCCA-----------AUAUGUUUGGUUUAUUUGCUACAUGACAGGUUGUUUCUGUGGCUAAUUGCCGUGGGUAAGGGCAUUGG --((((((((((((..((((((..(((..-----------.(((((..(((......))))))))...)))))))))...(((.....)))))))).))))))).... ( -30.00, z-score = -2.17, R) >droSim1.chr2L 7262389 94 - 22036055 --UGCUCUUCCUAUUUCAAGCACUACCAAU------------AUGUUUGGUUUAUUUGCUAUAUGACAGGUUGUUUCUGUGGCUAAUUGCCGUGGGUAAGGGCAUUGG --((((((((((((....((((..(((((.------------....))))).....)))).....(((((.....)))))(((.....)))))))).))))))).... ( -30.00, z-score = -2.76, R) >droSec1.super_3 2986519 94 - 7220098 --UGCUCUUCCUAUUUCAAGCACUACCGAUAUG------------UUUGGUUUAUUUGCUAUAUGACAGGUUGUUUCUGUGGAUAAUUGCCGUGGGUAAGGGCAUUGG --((((((((((((..((((((..(((((....------------.))))).....))))...(.(((((.....))))).).....))..))))).))))))).... ( -26.50, z-score = -1.73, R) >droYak2.chr2L 16897434 94 + 22324452 --UGCUCUUCCUAUUUGAAGCACUGCCGAU--------GGG----UUUGGCUUAUUCGGUAUAUGACAGGUUGUUUCUGCGGCUAAUUGCCGUGGGUAAGGGCAUUGG --((((((((((....((((((((((((((--------(((----.....)))).)))))........)).)))))).(((((.....)))))))).))))))).... ( -33.00, z-score = -2.29, R) >droEre2.scaffold_4929 16389935 103 - 26641161 --GGCUCUUCCUAUUUAAAGCACUACCGAUACU---UCGGAUACUUUUGGUUUAUUUGGUAUAGGACAGGUUGUUUCUCUAGCUAAUUGCCGUGGGUAAGGGCAUUGG --.(((((((((((...........((((....---))))........(((....(((((.((((((.....)))...))))))))..)))))))).))))))..... ( -25.80, z-score = -0.65, R) >droAna3.scaffold_12916 15378919 95 - 16180835 --UGCUCUUCCUAUAUAAGAUGGUUGUAAU----------ACAUAUAUGUAUAAUAUGA-ACGUGUUUUUUUUUAUCUUCGGCUAAUUGCCGUGGGUAAGGGCAUUGG --((((((((((((..(((((((....(((----------((.(((((.....))))).-..))))).....))))))).(((.....)))))))).))))))).... ( -26.90, z-score = -3.14, R) >dp4.chr4_group1 4240663 108 - 5278887 AACUCAUUUCCUAUACAAGAAAAUAUAUAUGUGGAUAAGCACACGUUUCGGUUGUUGUUUCUCUGUCUCUCUUGUCUUCCGACUAAUUGUCGUGGGUAAGGGCAUUGG ..............((((.((.......(((((........))))).....)).))))..........((((((.((..((((.....))))..))))))))...... ( -20.10, z-score = 0.15, R) >droPer1.super_5 5845051 108 + 6813705 AACUCAUUUCCUAUACAAGAAAAUAUAUAUGUGGAUAAGCACACGUUUCGGUUGUUGUUUCUCUGUCUCUCUUGUCUUCCGACUAAUUGUCGUGGGUAAGGGCAUUGG ..............((((.((.......(((((........))))).....)).))))..........((((((.((..((((.....))))..))))))))...... ( -20.10, z-score = 0.15, R) >consensus __UGCUCUUCCUAUUUAAAGCACUACCGAU__________A_ACGUUUGGUUUAUUUGCUAUAUGACAGGUUGUUUCUGCGGCUAAUUGCCGUGGGUAAGGGCAUUGG ...(((((((((((...................................(((............))).............(((.....)))))))).))))))..... (-11.37 = -11.40 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:47 2011