| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,774,755 – 10,774,811 |
| Length | 56 |
| Max. P | 0.935528 |
| Location | 10,774,755 – 10,774,811 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 98.57 |
| Shannon entropy | 0.02578 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.66 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10774755 56 + 27905053 CUAUAAAGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACAGUCAUCCAA .......((((......))))..(((((((((....)))).))))).......... ( -13.50, z-score = -2.02, R) >droSim1.chr3R 16833260 56 - 27517382 CUAUAAUGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACAGUCAUCCAA ......(((((......))))).(((((((((....)))).))))).......... ( -14.30, z-score = -1.96, R) >droSec1.super_0 9959675 56 - 21120651 CUAUAAUGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACAGUCAUCCAA ......(((((......))))).(((((((((....)))).))))).......... ( -14.30, z-score = -1.96, R) >droYak2.chr3R 13181830 56 - 28832112 CUAUAAUGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACACUCAUCCAA ......(((((......))))).(((((((((....)))).))))).......... ( -14.30, z-score = -2.30, R) >droEre2.scaffold_4770 10312045 56 + 17746568 CUAUAAUGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACAGUCAUCCAA ......(((((......))))).(((((((((....)))).))))).......... ( -14.30, z-score = -1.96, R) >consensus CUAUAAUGGCGCGACAAUGCCAAGUGGGAAAUCCCCAUUUCCCCACAGUCAUCCAA ......(((((......))))).(((((((((....)))).))))).......... (-13.46 = -13.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:11 2011