| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,770,987 – 10,771,077 |
| Length | 90 |
| Max. P | 0.669986 |
| Location | 10,770,987 – 10,771,077 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.05102 |
| G+C content | 0.45556 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.43 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.669986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10770987 90 - 27905053 CACAAACGCAGAUACAUGGCAAAGAUACAGAUACAAAAUGCCGUCUGGCUUGGAGGUGUGUGCGCCAUAAAAGUGAAAACGAAAUGGCAA .......(((.((((....(.(((...(((((..........))))).))).)..)))).)))(((((....((....))...))))).. ( -24.00, z-score = -1.87, R) >droSim1.chr3R 16827354 90 + 27517382 CACGAACGCAGAUACAUGGCACAGAUACAGAUACAAAAUGCCGUCUGACUUGGAGGUGUGCGAGCCAUAAAAGUGAAAACGAAAUGGCAA ......((((.((.((.(...(((((.((.........))..))))).).))...)).)))).(((((....((....))...))))).. ( -20.80, z-score = -1.43, R) >droSec1.super_0 9955949 90 + 21120651 CACGAACGCAGAUACAUGGCACAGAUACAGAUACAAAAUGCCGUCUGGCUUGGAGGUGUGCGAGCCAUAAAAGUGAAAACGAAAUGGCAA ......((((.((.((.(((.(((((.((.........))..))))))))))...)).)))).(((((....((....))...))))).. ( -25.30, z-score = -2.45, R) >consensus CACGAACGCAGAUACAUGGCACAGAUACAGAUACAAAAUGCCGUCUGGCUUGGAGGUGUGCGAGCCAUAAAAGUGAAAACGAAAUGGCAA ......((((.((.((.(((.(((((.((.........))..))))))))))...)).)))).(((((....((....))...))))).. (-19.99 = -20.43 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:10 2011