| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,705,141 – 10,705,233 |
| Length | 92 |
| Max. P | 0.513685 |
| Location | 10,705,141 – 10,705,233 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 92.61 |
| Shannon entropy | 0.11746 |
| G+C content | 0.45924 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.32 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10705141 92 - 27905053 GGAAAAACGUGCGUUUUUCACCGGCGCAGGAAAAUGACAACAAAAGGGA-AAUCGUGAUGUAAACAAAAAGCAGCUGACUUCAGCUGUUGCAG .(((((((....)))))))......((.........(((.((...((..-..)).)).)))........((((((((....)))))))))).. ( -22.20, z-score = -0.70, R) >droSim1.chr3R 16761264 91 + 27517382 GGAAAAACGUGCGUUUUUCACCGGCGCAGGAAAAUGACAACAAAA-GGG-AUACGCGAUGUAAACAAAAGACAGCUGACUUCAGCUGUUGCAG ......((((((((.(..(.((......))....((....))...-)..-).)))).))))........((((((((....)))))))).... ( -23.30, z-score = -1.38, R) >droSec1.super_0 9890437 92 + 21120651 GGAAAAACGUGCGUUUUUCACCGGCGCAGGAAAAUGACAACAAAAGGGG-AAACGCGAUGUAAACAAAAGACAGCUGACUUCAGCUGUUGCAG ......((((((((((..(.((......))....((....))....)..-)))))).))))........((((((((....)))))))).... ( -26.40, z-score = -2.22, R) >droYak2.chr3R 13109397 93 + 28832112 GGGAAAACGUGCGUUUUUCACCGGCGCAGGAAAAUGACAACAAGAGAGAGGAACGCGAUGUAAACAAAAAACAGCUGACUUAAGCUGUUGCAG ......(((((((((((((.((......))....((....)).....))))))))).))))........(((((((......))))))).... ( -24.00, z-score = -1.73, R) >consensus GGAAAAACGUGCGUUUUUCACCGGCGCAGGAAAAUGACAACAAAAGGGA_AAACGCGAUGUAAACAAAAAACAGCUGACUUCAGCUGUUGCAG ......((((((((((.((.((......))....((....)).....)).)))))).))))........((((((((....)))))))).... (-20.64 = -20.32 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:04 2011