| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,693,276 – 10,693,328 |
| Length | 52 |
| Max. P | 0.938431 |
| Location | 10,693,276 – 10,693,328 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 80.26 |
| Shannon entropy | 0.34061 |
| G+C content | 0.42717 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -8.57 |
| Energy contribution | -8.53 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10693276 52 - 27905053 CAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCA------- ...(((((((((...........)))))))))..........((.....)).------- ( -11.40, z-score = -1.52, R) >droSim1.chr3R 16747681 52 + 27517382 CAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCA------- ...(((((((((...........)))))))))..........((.....)).------- ( -11.40, z-score = -1.52, R) >droSec1.super_0 9878544 52 + 21120651 CAAUAUUUGCUUGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCA------- (((...(((.((((((.......)))))).)))...)))...((.....)).------- ( -10.00, z-score = -0.44, R) >droYak2.chr3R 13097535 52 + 28832112 CAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCA------- ........((((((((.......))))(((.....)))..))))........------- ( -12.10, z-score = -1.02, R) >droEre2.scaffold_4770 10228108 52 - 17746568 CAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGCGCGCACAGCA------- .......(((.((((((((................)))))))).))).....------- ( -16.09, z-score = -2.46, R) >dp4.chr2 7772262 55 - 30794189 CAAUAUUUGCUCA-UCAAACACAGAGCAAACAAUUUUCG---GCACACAUUUGUCCGGG .....(((((((.-.........)))))))......(((---(.(((....))))))). ( -12.30, z-score = -3.75, R) >droPer1.super_0 1595634 55 - 11822988 CAAUAUUUGCUCA-UCAAACACAGAGCAAACAAUUUUCG---GCACACAUUUGUCCGGG .....(((((((.-.........)))))))......(((---(.(((....))))))). ( -12.30, z-score = -3.75, R) >consensus CAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCA_______ ...(((((((((...........)))))))))........................... ( -8.57 = -8.53 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:03 2011