| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,692,194 – 10,692,256 |
| Length | 62 |
| Max. P | 0.723478 |
| Location | 10,692,194 – 10,692,256 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 72.93 |
| Shannon entropy | 0.47841 |
| G+C content | 0.45565 |
| Mean single sequence MFE | -12.83 |
| Consensus MFE | -6.27 |
| Energy contribution | -7.62 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10692194 62 - 27905053 ACAAAAAGGGAUAAACAAAUUGGCGGA-GAUGGACUGGACAGGCGAAAGCUUGCAGUGAAUCU--------- ..........................(-(((..((((..(((((....)))))))))..))))--------- ( -15.80, z-score = -3.42, R) >droSim1.chr3R 16746588 62 + 27517382 ACAAACAGGGAUAAACAAAUUGGCGGA-GAUGGACUGGACAGGCGAAAGCUUGCAGUGAAUCU--------- ..........................(-(((..((((..(((((....)))))))))..))))--------- ( -15.80, z-score = -3.10, R) >droSec1.super_0 9877443 62 + 21120651 ACAAAAAGGGAUAAACAAAUUGGCGGA-GAUGGACUGGACAGGCGAAAGCUUGCAGUGAAUCU--------- ..........................(-(((..((((..(((((....)))))))))..))))--------- ( -15.80, z-score = -3.42, R) >droYak2.chr3R 13096414 51 + 28832112 ACAAACAGGGAUAAACAAAUUGGCGGA-GAUGGACUGGAC-----------UGCAGUGGUUCU--------- ..........................(-((...((((...-----------..))))...)))--------- ( -3.90, z-score = 1.75, R) >droEre2.scaffold_4770 10227021 62 - 17746568 ACAAACCGGGAUAAACAAAUUGGCGGA-GAUGGACUGGACAGGCGAAAGCUUGCAGUGAUUCU--------- .....(((.(((......)))..)))(-((...((((..(((((....)))))))))...)))--------- ( -14.90, z-score = -1.77, R) >droGri2.scaffold_14624 2351896 71 + 4233967 ACGGAAUAUAAAAAAUCGGCUGGCAGACGAUUGGUUAGUCAAACUACAGC-UACACCAAAUAUAGUACGCCU .....................(((..((..(((((((((.........))-)).))))).....))..))). ( -10.80, z-score = -0.00, R) >consensus ACAAAAAGGGAUAAACAAAUUGGCGGA_GAUGGACUGGACAGGCGAAAGCUUGCAGUGAAUCU_________ ............................(((..((((..(((((....)))))))))..))).......... ( -6.27 = -7.62 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:02 2011