| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,460,866 – 7,460,982 |
| Length | 116 |
| Max. P | 0.671088 |
| Location | 7,460,866 – 7,460,982 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.14 |
| Shannon entropy | 0.17805 |
| G+C content | 0.28414 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -16.32 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7460866 116 - 23011544 CAUUACUCACUUAUU--CUUAUUUUGUCUUUUUUAUUAACAUAAUUUAUAUCCAUUUUAUUUGUUUGUGUGCAUAAAAUUUCUCAAAGCCAUCACUGGCAGCUUG--AUAGAGUGAGAAA .............((--(((((((((((..((((((..((((((...(((.......)))....))))))..)))))).........((((....)))).....)--)))))))))))). ( -24.20, z-score = -2.84, R) >droEre2.scaffold_4929 16380710 116 - 26641161 CAUUACUCACUAAUU--CUUAUUUCGCCUUUUUUAUUAACAUAAUUUAUAUCCAUUUCAUUUGUUUGUGUGCAUAAAAUUUGCAAAAGCCAUCACUGGCAGCUUU--AUAGAGUGAGAGG .....((((((....--........((...((((((..((((((....................))))))..))))))...))....((((....))))......--....))))))... ( -21.15, z-score = -1.45, R) >droYak2.chr2L 16887285 110 + 22324452 CAUUACUCACUUAUUCCCCUAUUUUGUCUUUUUUAUUAACAUAAUUUAUAUCCAUUUUAUUUGUUUGUGUGCAUAAAAU----------CAUCACUGGCAGCUCGAAAGAGAGUGAGAAA .....((((((............(((((..((((((..((((((...(((.......)))....))))))..)))))).----------.......)))))(((....)))))))))... ( -20.30, z-score = -1.95, R) >droSec1.super_3 2977696 116 - 7220098 CAUUACUCACUUAUU--CUUAUUUUGUAAUUUUUAUUAACAUAAUUUAUAUCCAUUUUAUUUGUUUGUGUGCAUAAAAUUUCUCAAAGUCAUCACUGGCAGCUUG--AUAGAGUGAGAAA .....(((((((..(--(....((((.((((((.....((((((...(((.......)))....))))))....))))))...))))((((....)))).....)--)..)))))))... ( -19.90, z-score = -1.24, R) >droSim1.chr2L 7252775 116 - 22036055 CAUUACUCACUUAUU--CUUAUUUUGUCUUUUUUAUUAACAUAAUUUAUAUCCAUUUUAUUUGUUUGUGUGCAUAAAAUUUCUCAAAGCCAUCACUGGCAGCUUG--AUAGAGUGAGAAA .............((--(((((((((((..((((((..((((((...(((.......)))....))))))..)))))).........((((....)))).....)--)))))))))))). ( -24.20, z-score = -2.84, R) >consensus CAUUACUCACUUAUU__CUUAUUUUGUCUUUUUUAUUAACAUAAUUUAUAUCCAUUUUAUUUGUUUGUGUGCAUAAAAUUUCUCAAAGCCAUCACUGGCAGCUUG__AUAGAGUGAGAAA .....(((((((..................((((((..((((((...(((.......)))....))))))..)))))).........((((....))))...........)))))))... (-16.32 = -17.00 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:46 2011