| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,687,395 – 10,687,455 |
| Length | 60 |
| Max. P | 0.571377 |
| Location | 10,687,395 – 10,687,455 |
|---|---|
| Length | 60 |
| Sequences | 8 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 68.02 |
| Shannon entropy | 0.63599 |
| G+C content | 0.56944 |
| Mean single sequence MFE | -16.58 |
| Consensus MFE | -7.79 |
| Energy contribution | -7.91 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10687395 60 - 27905053 UAAACACCGCCACG---AGGACCACUAGA-GUCAACCCACCUGGAUGACAGUAACAGGUGGCAG ........(((((.---((.....))...-((((.((.....)).))))........))))).. ( -15.60, z-score = -1.54, R) >droAna3.scaffold_13340 13686344 57 + 23697760 UAAAAAGCUCCACA--GAACCCCACU-CA-AUUUACCCAACUGGGUGCCAGUAACAGGUUG--- ..............--.((((.....-..-...(((((....))))).........)))).--- ( -8.61, z-score = 0.35, R) >droPer1.super_0 1588244 61 - 11822988 UGAGCGCCUCCGCACAAGGGGGAGGGG---GGCCGACUGCCUGUCCGCCAGGAAAAGGUAACAG ....(.(((((.(.....).))))).)---(((.(((.....))).)))............... ( -20.80, z-score = 0.63, R) >dp4.chr2 7765016 64 - 30794189 UGAGCGCCUCCGCACAAGGGGGGAGGGGGUGGCCGACUGCCUGUCCGCCAGGAACAGGUAACAG ..(.(.(((((.(......).))))).).).......(((((((((....)).))))))).... ( -24.20, z-score = 0.23, R) >droSim1.chr3R 16741695 60 + 27517382 UAAACACCGCCACG---AGGACCACUAGA-GUCAACCCACCUGGAUGACAGUAACAGGUGGCAG ........(((((.---((.....))...-((((.((.....)).))))........))))).. ( -15.60, z-score = -1.54, R) >droSec1.super_0 9872546 60 + 21120651 UAAACACUGCCACG---AGGACCACUAGA-GUCAACCCACCUGGAUGACAGUAACAGGUGGCAG ......(((((((.---((.....))...-((((.((.....)).))))........))))))) ( -18.30, z-score = -2.27, R) >droYak2.chr3R 13091291 63 + 28832112 UAAACGCCGCCACGAGAAGGACCACUACA-GUCGACCCACCUGAAUGACAGUAACAGGUGGCUG .....((((((........(((.......-))).......(((.....))).....)))))).. ( -14.70, z-score = -1.15, R) >droEre2.scaffold_4770 10222043 60 - 17746568 UAAACUGCGCCACG---AGGACCACUAGA-GUCAACCCACCUGAAUGACAGUAACAGGUGGCAG ....((((......---..((((....).-)))....((((((...........)))))))))) ( -14.80, z-score = -1.36, R) >consensus UAAACACCGCCACG___AGGACCACUAGA_GUCAACCCACCUGGAUGACAGUAACAGGUGGCAG ....................................(((((((...........)))))))... ( -7.79 = -7.91 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:16:00 2011