| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,680,419 – 10,680,511 |
| Length | 92 |
| Max. P | 0.564224 |
| Location | 10,680,419 – 10,680,511 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.23 |
| Shannon entropy | 0.47912 |
| G+C content | 0.29908 |
| Mean single sequence MFE | -15.18 |
| Consensus MFE | -7.86 |
| Energy contribution | -8.28 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10680419 92 + 27905053 AAGAUAUUAC-UUAUCGUAAACAUUGCGUGCUA-------UGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUUUUGGCAUGCCAUAAAUUAUCUU ((((((((((-.....)))).....((((((((-------.((..((((((............))))))....))....)))))))).......)))))) ( -15.50, z-score = -1.63, R) >droSim1.chr3R 16734722 92 - 27517382 AAGAUAAUAC-UUAUCGUAAACAUAGCGUGCCA-------UGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUGUAGGCAUGCGAUACAUUAUCUU ((((((((..-.(((((....)...((((((((-------((((.((((.(.....).)))).)))))............))))))))))).)))))))) ( -19.40, z-score = -2.28, R) >droSec1.super_0 9865588 92 - 21120651 AAAAUAAUAC-UUAUCGUAAACAUAGCGUGCCA-------UGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUUUAGACAUGCGAUACAUUAUCUU ..........-................((((((-------(((((((.....(((((.(((...)))))))).....))))))))).).)))........ ( -11.90, z-score = -0.92, R) >droYak2.chr3R 13084407 99 - 28832112 CAGAUAAUAC-UUAUCACAAACAAAGCGUGCCAGUAUACUUGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUUUAGGCAUGUGAUAAAUUAUCUU .(((((((..-((((((((....(((..((....))..)))((((((.....(((((.(((...)))))))).....)))))).))))))))))))))). ( -18.30, z-score = -2.03, R) >droEre2.scaffold_4770 10214989 100 + 17746568 CAGAUAAAACCUUAUCACAAACAAAGCGUGCCAGUGCACAUGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUUUAGGCAUGCGAUAAAUUAUCUU .((((((....(((((.(.........((((....))))((((((((.....(((((.(((...)))))))).....))))))))).))))).)))))). ( -17.40, z-score = -1.54, R) >droWil1.scaffold_181130 12138440 79 - 16660200 CAGGAAAUACUUUUUUCUAGGCGUUAUA-ACCA------UUAGAUUAGGUCU-----CUCUUUAACGUUUAAAAUAUGU---CACGUU-UAAAUU----- ..(((((.....)))))(((((((((..-(((.------........)))..-----.....)))))))))........---......-......----- ( -8.60, z-score = 0.31, R) >consensus AAGAUAAUAC_UUAUCGUAAACAUAGCGUGCCA_______UGUCUAAUAUCCUUAAGCUAUUUGAUAUUUAAAACCUUUAGGCAUGCGAUAAAUUAUCUU ..(((((....))))).........(((((((.............((((((............))))))...........)))))))............. ( -7.86 = -8.28 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:59 2011