| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,675,251 – 10,675,356 |
| Length | 105 |
| Max. P | 0.821978 |
| Location | 10,675,251 – 10,675,356 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 93.17 |
| Shannon entropy | 0.11060 |
| G+C content | 0.27758 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -17.84 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.07 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10675251 105 - 27905053 GAAGUGGACCAAAGUGUGAGUUGUUAUUGAUUUGUUGGCAGUUGCUGUUACAAUUAUUAUUGCGCACACUUUUCUUUCUCUAUUUUUCAAUAUUUUUUAUUUUUC ((((((((..((((((((.((...((.(((((.((.(((((...)))))))))))).))..)).))))))))......))))))))................... ( -20.00, z-score = -1.44, R) >droSim1.chr3R 16729701 105 + 27517382 AAAGUGGACCAAAGUAUGAGUUGUUAUUGAUUUGUUAGCAGUUGCUGUUACAAUUAUUAUUGCGCAUACUUUUCUUUCUCUAUUUUUCAAUAUAUUUUAUUUUUU ((((((((..((((((((.((...((.(((((.((.(((((...)))))))))))).))..)).))))))))......))))))))................... ( -18.10, z-score = -1.36, R) >droSec1.super_0 9860569 105 + 21120651 AAAGUGGACCAAAGUAUGAGUUGUUAUUGAUUUGUUAGCAGUUGCUGUUACAAUUAUUAUUGCGCAUACUUUUCUUUCUCUAUUUUUCAAUAUAUUUUAUUUUUU ((((((((..((((((((.((...((.(((((.((.(((((...)))))))))))).))..)).))))))))......))))))))................... ( -18.10, z-score = -1.36, R) >droEre2.scaffold_4770 10209909 103 - 17746568 AAAGUGGACCAAAGUAUGAGUUGUUUUUGAUUUGUUAGCUGUUGCUGUUACAAUUAUUAUUGCGCACGCUUUU-UUUCUCUAUUUUCCAAUAUUUCUUAUAUUU- ((((((((..((((..((.((.((...(((((.((((((....))))..)))))))..)).)).))..)))).-....))))))))..................- ( -15.00, z-score = -0.10, R) >consensus AAAGUGGACCAAAGUAUGAGUUGUUAUUGAUUUGUUAGCAGUUGCUGUUACAAUUAUUAUUGCGCACACUUUUCUUUCUCUAUUUUUCAAUAUAUUUUAUUUUUU ((((((((..((((((((.((.((...(((((.((((((....))))..)))))))..)).)).))))))))......))))))))................... (-17.84 = -17.27 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:58 2011