| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,670,366 – 10,670,506 |
| Length | 140 |
| Max. P | 0.555758 |
| Location | 10,670,366 – 10,670,506 |
|---|---|
| Length | 140 |
| Sequences | 5 |
| Columns | 140 |
| Reading direction | reverse |
| Mean pairwise identity | 92.98 |
| Shannon entropy | 0.12342 |
| G+C content | 0.46369 |
| Mean single sequence MFE | -42.08 |
| Consensus MFE | -35.38 |
| Energy contribution | -35.70 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10670366 140 - 27905053 GCCUGUCCUUCCGUAAUUUCAAAUUACUUCCUCUGUGAGAUUCUGGAAAGGCAUUGUAGCUUUAUGCAACUACUUUUCCUGAAGCUCAGAAACAUGCACUCUACUGUGGGCUGUCUGUGGAGGUCUGUGUGGACUUCCAG ((((((..(((.(((((.....)))))........((((.(((.(((((((..(((((......)))))...))))))).))).))))))))))..(((......))))))......(((((((((....))))))))). ( -40.10, z-score = -1.48, R) >droSim1.chr3R 16724414 137 + 27517382 GCCUGUCCUUCGGUAAUUUCAAAUUACUUUCUCUGUGAGAUUCUGGAAAGGCAUUGUAGCUUUAUGCAACUACUUUUCCUGAGGCUCAGAAACAUGCACUCGACUGUGGGCUGUC---GGAGGUCUGUGUGGACUUCCAG (((..(...((((((((.....)))))......(.((((.(((.(((((((..(((((......)))))...))))))).))).)))).)..........)))..)..)))....---((((((((....)))))))).. ( -40.80, z-score = -1.23, R) >droSec1.super_0 9855739 137 + 21120651 GGCUGUCCUUCGGUAAUUUCAAAUUACUUUCUCUGUGAGAUUCUGGAAAGGCAUUGUAGCUUUAUGCAACUACUUUUGCUGAGGCUCAGAAACAUGCACUCGACUGUGGGCUGUC---GGAGGUCUGUGUGGACUUCCAG (((.((((..((((............((((((..(.......).))))))((((((.(((((((.((((......))))))))))))).....)))).....)))).)))).)))---((((((((....)))))))).. ( -43.00, z-score = -1.60, R) >droYak2.chr3R 13074106 137 + 28832112 GCCUGUGCCUCGGUAAUUUCAAAUUACUUUCUCUGGGAGGUUCUGGAAAGGCAUUGUGGCUUUAUGCAACUACUUUUCCUGAAGCUCGGAAAUAUGCACUCGAAUGUGGGCUGUC---GGAGGUCUGUGUGGACUUCCAG (((..((..(((((((((((......((......))(((.(((.(((((((....((.((.....)).))..))))))).))).))).))))).)))...))).))..)))....---((((((((....)))))))).. ( -42.50, z-score = -1.34, R) >droEre2.scaffold_4770 10205001 137 - 17746568 GUCGGUGCUUCGGUAAUUUAAAAUUACUUUCUCUGUGAGAUUCUGGAAGGGCAUUGUAGCUUUAUGCAACUACUUUUCCUGAAGCUCAGAAACAUGCACUCGAAUGUGGGCAUUC---GGAGGUCUGUGUGGACUUCCAG ...(((((...((((((.....)))))).....(.((((.(((.(((((((..(((((......)))))...))))))).))).)))).).....))))).(((((....)))))---((((((((....)))))))).. ( -44.00, z-score = -2.54, R) >consensus GCCUGUCCUUCGGUAAUUUCAAAUUACUUUCUCUGUGAGAUUCUGGAAAGGCAUUGUAGCUUUAUGCAACUACUUUUCCUGAAGCUCAGAAACAUGCACUCGACUGUGGGCUGUC___GGAGGUCUGUGUGGACUUCCAG (((.....(((((((((.....)))))).......((((.(((.(((((((..(((((......)))))...))))))).))).))))))).....(((......)))))).......((((((((....)))))))).. (-35.38 = -35.70 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:55 2011