| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,653,418 – 10,653,492 |
| Length | 74 |
| Max. P | 0.827132 |
| Location | 10,653,418 – 10,653,492 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.32231 |
| G+C content | 0.47851 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.45 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10653418 74 - 27905053 AUACCGCUGAG-UCGCCGAUUUACUUGUUGACUGUUUGA-----CGUCUCCAACGAAAGUU-GGGAAAAUGUUUGGCGAGG ...........-(((((((.......((..(....)..)-----).((.(((((....)))-))))......))))))).. ( -22.30, z-score = -1.99, R) >droSim1.chr3R_random 585668 74 - 1307089 AUACCGCUGAG-UCGCCGAUUUACUUGUUGACUGUUUGA-----CGUCUCCAACGAAAGUU-GGGGAAAUGUUUGGCGAGG ...........-(((((((.......((..(....)..)-----).((((((((....)))-))))).....))))))).. ( -26.40, z-score = -3.13, R) >droSec1.super_0 9839032 74 + 21120651 AUAACGCUGAG-UCGCCGAUUUACUUGUUGACUGUUUCA-----CGUCUCCAACGAAAGUU-GCGGAAAUGUUUGGCGAGG ....(((..((-(((.(((.....))).)))).....((-----..(((.((((....)))-).)))..)).)..)))... ( -20.20, z-score = -0.98, R) >droYak2.chr3R 13056812 74 + 28832112 AUAGCACUAAG-UCGCCGAUUUACUUGUUGACUGUUUGA-----CGUCUCCAACGAAAGUU-GGGGAAAUGUUUGGCGAGG ...........-(((((((.......((..(....)..)-----).((((((((....)))-))))).....))))))).. ( -26.40, z-score = -3.50, R) >droEre2.scaffold_4770 10187901 74 - 17746568 AUUCCACUGAC-UCGCCGAUUUACUUGUUGACUGUUUGA-----CGUCUCCAACGAAAGUU-GGGGAAAUGUUUGGCGAGG ..........(-(((((((.......((..(....)..)-----).((((((((....)))-))))).....)))))))). ( -29.80, z-score = -4.70, R) >droAna3.scaffold_13340 13655385 81 + 23697760 AUUCCGCUGACUUCGCUAAUUAGCCUGUUGAUUUCUCGAAAAAUCGCACUCUCUGCGGCUCGGGGGAAAUGUUCGGCGAAG ....((((((....(((....))).......(..(((((....(((((.....))))).)))))..).....))))))... ( -22.00, z-score = -0.59, R) >consensus AUACCGCUGAG_UCGCCGAUUUACUUGUUGACUGUUUGA_____CGUCUCCAACGAAAGUU_GGGGAAAUGUUUGGCGAGG ............((((((((......))).................((((((((....))).))))).......))))).. (-12.81 = -13.45 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:53 2011