| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,647,423 – 10,647,513 |
| Length | 90 |
| Max. P | 0.608107 |
| Location | 10,647,423 – 10,647,513 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 67.36 |
| Shannon entropy | 0.60640 |
| G+C content | 0.32047 |
| Mean single sequence MFE | -14.80 |
| Consensus MFE | -6.38 |
| Energy contribution | -8.38 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10647423 90 + 27905053 UUAAGUUCUUGCACUGAUAUAAACAACAUAUUUAA--UAACCCAGCACCAGGUUGAAUAACUUCCCUAUAAAUAUGUUCUGUUUAUAAUUGA .................(((((((((((((((((.--.((((........))))(((....)))....)))))))))..))))))))..... ( -14.50, z-score = -1.74, R) >droSim1.chr3R 16704852 90 - 27517382 UUAAGUACUUGCACUGAUAUAAACAACAUAUUUAA--UAACCCAGCACCAGGUUGGGUAAAUUCCCUAUAAAUAUGUUCUGUUUAUAAUUGA .................(((((((((((((((((.--(((((((((.....)))))))........)))))))))))..))))))))..... ( -20.20, z-score = -2.34, R) >droSec1.super_0 9833043 90 - 21120651 UUAAGUUCUUGCACUGAUACAAACAACAUAUUUAA--UAACCCAGCACCAGGUUGGGUAAUUUCUAUAUAUAUAUGUUCUGUUUAUAAUUGA ....................(((((((((((..((--(.(((((((.....))))))).))).........))))))..)))))........ ( -15.10, z-score = -0.56, R) >droYak2.chr3R 13050628 75 - 28832112 ---------------UAUAUAAACAAUAUAUUUGA--UAGCUCAGUACCAGGUUGGAUAACUUCCCCAUAAAUAUGCACUGUUUACAAUUGA ---------------....((((((.((((((((.--.((((........))))(((.....)))...))))))))...))))))....... ( -9.10, z-score = 0.43, R) >droEre2.scaffold_4770 10181849 90 + 17746568 UUAAGUUCUUUCACUGAUAUAAACAGUAUAUUUGA--UAGCCCAGUACCGGGUUGUAUAACUUGCCCAUAAAUAUGUGCUGUUUAUAAUCGA ..............(((((((((((((((((...(--((((((......))))))).................))))))))))))).)))). ( -22.75, z-score = -3.04, R) >droAna3.scaffold_13340 13649618 79 - 23697760 ------------UUUAAUGUUUACCACAAAGUAAAGCUAUUCGUAUACCAU-UUGGAGACAUUCCCGACAAGCAAUAGACCUCCACCACCUG ------------.......(((((......)))))(((..(((........-.((....))....)))..)))................... ( -7.12, z-score = 0.06, R) >consensus UUAAGUUCUUGCACUGAUAUAAACAACAUAUUUAA__UAACCCAGCACCAGGUUGGAUAACUUCCCUAUAAAUAUGUUCUGUUUAUAAUUGA .................(((((((((((((((((....((((........))))(((.....)))...)))))))))..))))))))..... ( -6.38 = -8.38 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:52 2011