| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,596,614 – 10,596,680 |
| Length | 66 |
| Max. P | 0.875369 |
| Location | 10,596,614 – 10,596,680 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 66.76 |
| Shannon entropy | 0.57082 |
| G+C content | 0.31813 |
| Mean single sequence MFE | -13.69 |
| Consensus MFE | -5.00 |
| Energy contribution | -5.42 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10596614 66 + 27905053 AUCAAUUGCAACUUUUAU-AUAGCUUUAAUUA---GGGUUGUUAAAGUGUUUCAACCCUGUUAAGUUUAC-------- ..................-..(((((....((---((((((...........))))))))..)))))...-------- ( -12.70, z-score = -1.79, R) >droEre2.scaffold_4770 10130655 64 + 17746568 AUAAAUUGCAACAUUUAA-AUUGCUUUUAUUA---GGGUUGUUAACGUUU--CAACCCUGUUAAGCAUAC-------- ..................-..(((((....((---((((((.........--))))))))..)))))...-------- ( -15.80, z-score = -3.11, R) >droYak2.chr3R 12999201 66 - 28832112 AUAAAUUGCAGCAUUCAA-AUUGCUUUUAUUA---GGGUUGUUAACGUUUUGCAACCCUCUUAAAUAUAC-------- .........((((.....-..))))((((..(---(((((((.........))))))))..)))).....-------- ( -15.50, z-score = -2.98, R) >droSec1.super_0 9783177 66 - 21120651 AUCGAUUACCACUUUUAU-AUAGCUUUUAUUA---GGGUUGUUAGAGUUUUUGAACCCUGGUAAGUUUAC-------- ..................-......(((((((---(((((.............)))))))))))).....-------- ( -11.72, z-score = -0.89, R) >droSim1.chr3R 16653045 66 - 27517382 AUCAAUUACCACUUUUAU-AUAGCUUUUAUUA---GGGUUGUUAGAGUUUUUCAACCCUGUGAAGCUUAC-------- ..................-..((((((...((---((((((...........)))))))).))))))...-------- ( -16.70, z-score = -3.46, R) >droGri2.scaffold_14624 1751416 78 + 4233967 AUCAAUUAAAAAUGCUAUCGUAGCACCACCUACACGGAGCGAAAAGAUUUAUUCAAUCUGCCGAAGACUUAAGUCCAA .((.........((((...((((......))))....))))...(((((.....)))))...)).(((....)))... ( -9.70, z-score = -0.18, R) >consensus AUCAAUUACAACUUUUAU_AUAGCUUUUAUUA___GGGUUGUUAAAGUUUUUCAACCCUGUUAAGUAUAC________ ...................................((((((...........)))))).................... ( -5.00 = -5.42 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:48 2011