| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,562,404 – 10,562,506 |
| Length | 102 |
| Max. P | 0.842565 |
| Location | 10,562,404 – 10,562,506 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Shannon entropy | 0.27780 |
| G+C content | 0.49061 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -15.92 |
| Energy contribution | -15.92 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10562404 102 + 27905053 GCAAGACUAUAUAAUUUACGAUUUCACUUUUU-GUGACGUCAUUGGAGAGUGACCCCCAUAUGGCUGGCACCUCUUCCUCUUCCCGCUUGAGUGGUGAAGGGG ...................(((.((((.....-)))).)))...((((.(((.((.((....))..))))))))).(((((((((((....)))).))))))) ( -32.80, z-score = -2.39, R) >droEre2.scaffold_4770 10096331 88 + 17746568 GCACGGCUAUAUAAUUUGCGAUUUCACUUUUCAGUGACGUCAUUGGAGAGUGACCCCCAUAUGGCCCCCACCUC--ACCCCUUCCUCUUU------------- ....((((((((((((...))))(((((((((((((....))))))))))))).....))))))))........--..............------------- ( -23.60, z-score = -3.82, R) >droYak2.chr3R 12963390 91 - 28832112 GCACGGCUAUAUAAUUUGCGAUUUCACUUUUUAGUGACGUCAUUGGAGAGUGACCCCCAUACGGCCCCCACCUCUCACCCCUUCCUCUUUG------------ ((.((((..........))....(((((((((((((....)))))))))))))........))))..........................------------ ( -18.20, z-score = -1.95, R) >droSec1.super_0 9749413 90 - 21120651 GCAAGGCUAUAUAAUUUACGAUUUCACUUUUU-GUGACGUCAUUGGAGAGUGACCCCCAUAUGGCUGGCACCUCUUCCUCUUCCCCCCUGA------------ ...(((.............(((.((((.....-)))).)))...((((((((.((.((....))..)))).)))))).........)))..------------ ( -20.10, z-score = -1.18, R) >droSim1.chr3R 16618653 94 - 27517382 GCAAGGCUAUAUAAUUUACGAUUUCACUUUUU-GUGACGUCAUUGGAGAGUGACCCCCAUAUGGCUGGCACCUCUUCCUCUUCCCCCUUGAGCGG-------- .(((((.............(((.((((.....-)))).)))...((((((((.((.((....))..)))).))))))........))))).....-------- ( -23.90, z-score = -1.49, R) >consensus GCAAGGCUAUAUAAUUUACGAUUUCACUUUUU_GUGACGUCAUUGGAGAGUGACCCCCAUAUGGCUGGCACCUCUUCCUCUUCCCCCUUGA____________ ....((((((((((((...))))(((((((((.(((....))).))))))))).....))))))))..................................... (-15.92 = -15.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:43 2011