| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,515,184 – 10,515,276 |
| Length | 92 |
| Max. P | 0.650313 |
| Location | 10,515,184 – 10,515,276 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.35 |
| Shannon entropy | 0.19329 |
| G+C content | 0.37812 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.18 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10515184 92 + 27905053 UAAGUAGCAGAUAUGUGCGUACAUCCAAG--UACGUACAUAUGUACAUCCGCCGGAUAUAUCAUGUUGAAGGGAGCUUCAAUAAAAUUAAGUUU ......(.(.((((((((((((......)--))))))))))).).)((((...))))......((((((((....))))))))........... ( -27.00, z-score = -3.80, R) >droSim1.chr3R 16569411 92 - 27517382 UAAGUAGCAGAUAUGUGCGUACAUCCAAA--UAAGUACAUAUGUACAUCCGCCGGAUACAUCGUGUUGAAGGGAACUUCAAUAAAAUAAAGUUU ...((((((......))).)))((((...--...((((....)))).......))))......((((((((....))))))))........... ( -19.52, z-score = -1.68, R) >droSec1.super_0 9701097 92 - 21120651 UAAGUAGCAGAAAUGUGCGUACAUACAAA--UAAGUACAUAUGUACAUCCGCCGGAUACAUCGUGUUGAAGGGAGCUUCAAUAAAAUAAUGUUU ......((.((..((((((((..(((...--...)))..)))))))))).)).....((((..((((((((....)))))))).....)))).. ( -21.10, z-score = -1.88, R) >droYak2.chr3R 12914482 94 - 28832112 UAAGUAGCAGAUAUGUGCGUACAUGCAGUGCCAGCUACGUAUGCACAUCCGGCGGAUACAUUGUGUUGAAGGGAGCUUUAAUAAAAUCAAGUUU ......((....((((((((((..((.......))...))))))))))...)).(((......((((((((....))))))))..)))...... ( -24.10, z-score = -0.52, R) >consensus UAAGUAGCAGAUAUGUGCGUACAUCCAAA__UAAGUACAUAUGUACAUCCGCCGGAUACAUCGUGUUGAAGGGAGCUUCAAUAAAAUAAAGUUU ...(((...(..(((((((((..(((........)))..)))))))))....)...)))....((((((((....))))))))........... (-17.05 = -17.18 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:37 2011