| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,514,379 – 10,514,483 |
| Length | 104 |
| Max. P | 0.928168 |
| Location | 10,514,379 – 10,514,483 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.50487 |
| G+C content | 0.55961 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -18.10 |
| Energy contribution | -17.80 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10514379 104 + 27905053 GAAUGUGGAGCGACUC---GGGGCAGGAAAUUGGAGCGGAUCAGGCUUGAAUUGAAAGCCGGCAAAGGCGGGAAGUCUUAGCAGUGGACACAUCGACACGCUCUACA ...(((((((((..((---(((((....((((.((((.......)))).))))....))).((.(((((.....))))).))..........))))..))))))))) ( -37.30, z-score = -2.97, R) >droSim1.chr3R 16568517 103 - 27517382 GAAUGUGGAGCGACUC---GGGGCAGGAAAUUGGAGCGGAUCAGGCA-GAAUUGAAAGCCGGCGAAGGCGGGAAGUCUUAGCAGUGGACACAACGACACGCUCUACA ...(((((((((..((---(..(.............(((.((((...-...))))...)))((.(((((.....))))).))........)..)))..))))))))) ( -30.90, z-score = -1.45, R) >droSec1.super_0 9700188 103 - 21120651 GAAUGUGGAGCGACUC---GGGGCAGGAAAUUGGAGCGGAUCAGGCA-GAAUUGAAAGCCGGCAAAGGCGGGAAGUCUUAGCAGUGGACACAACGACACGCUCUACA ...(((((((((..((---(..(.............(((.((((...-...))))...)))((.(((((.....))))).))........)..)))..))))))))) ( -30.90, z-score = -1.67, R) >droYak2.chr3R 12913564 79 - 28832112 GAAUGUGGAGCGAU----GGGGGCAGGAAAUUGGAGCGGAUCAGGCA-GAA-----------------------GUCUUAGCAGUGGACACAUCGACACGCUCUACA ...(((((((((..----....((((((..((...((.......)).-)).-----------------------.)))).)).((.((....)).)).))))))))) ( -21.60, z-score = -1.26, R) >droEre2.scaffold_4770 10048707 97 + 17746568 GAAUGUGGAGCGACUCGGACGGGCAGGAAAUUGGAGCGGAUCAGGCA-GAAUUGAAAG---------GCGGGAAGUCUUAGCAGUGGACACAUCGACACGCUCUACA ...(((((((((..((((....((((((.......((...((((...-...))))...---------))......)))).)).((....)).))))..))))))))) ( -25.12, z-score = -0.55, R) >droAna3.scaffold_13340 22597004 83 - 23697760 ----------------------GCUACAAAUUGGAGCGGAUCAGAGGGGGAUUGGGAGCUUCUGGCGGC--GAAGUCUUCCAAGUGGGCCCACCGGCAUGCUCCAGU ----------------------.......(((((((((...(...(((((.(((((((((((.......--)))).))))))).....))).)).)..))))))))) ( -32.70, z-score = -0.98, R) >consensus GAAUGUGGAGCGACUC___GGGGCAGGAAAUUGGAGCGGAUCAGGCA_GAAUUGAAAGCCGGC_AAGGCGGGAAGUCUUAGCAGUGGACACAUCGACACGCUCUACA ...............................(((((((..((...............(((......))).....((((.......)))).....))..))))))).. (-18.10 = -17.80 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:37 2011