| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,511,870 – 10,511,984 |
| Length | 114 |
| Max. P | 0.905004 |
| Location | 10,511,870 – 10,511,984 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 63.31 |
| Shannon entropy | 0.67685 |
| G+C content | 0.42126 |
| Mean single sequence MFE | -27.45 |
| Consensus MFE | -13.05 |
| Energy contribution | -11.67 |
| Covariance contribution | -1.38 |
| Combinations/Pair | 1.81 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10511870 114 + 27905053 AUGUAUGUAGAUACAUUCAUAUGUAUGUAUGUGUACCUGCGAGAUGCUAAACUUGCAUCUUGUAUCCGUUUGGUUUGCUCUUAUCUCUGGCCAAUU--GGCUAUGCCAAUGGGUUU ...((((((.((((((....)))))).))))))....((((((((((.......))))))))))((((((.(((.............(((((....--))))).)))))))))... ( -34.54, z-score = -2.83, R) >droEre2.scaffold_4770 10046186 106 + 17746568 --------AUGUAUGUCCAUAUGUACGUGUAUGUACCUGCGAGAUGAUAAACUUGCAUCUUGUAUCCGUUGGGUUUGCUCUUAUCUCUGGCCAAGU--GGCCAUGCCUGUGGGAUA --------..(((..((((...(((((....))))).(((((((((.........))))))))).....))))..)))...(((((((((((....--))))).......)))))) ( -29.11, z-score = -0.57, R) >droYak2.chr3R 12911060 100 - 28832112 --------------AUGUAUCUAUAUAUGCACAUACCUGCGAGAUGAUAAACUUGCAUCUCGUAUCCGUUUGGUUUGCUCUUAUCGCUGGCCAAGU--GGCUGUGCCAGUGGGAUA --------------...(((((......(((((....(((((((((.........))))))))).(((((((((..((.......))..)))))))--)).))))).....))))) ( -32.40, z-score = -2.02, R) >droSec1.super_0 9697796 94 - 21120651 ----------------------AUUUAUGUAUAUACCUGCAAGAUGAUAAACUUGCAUCUUGUAUCCGUUUGGUUUGCUCUUAUCUCUGGCCAAGUAUGGCUAUGCCAUUGGGUUU ----------------------...............(((((((((.........)))))))))((((..((((.............((((((....)))))).)))).))))... ( -21.14, z-score = -0.59, R) >droSim1.chr3R 16566140 92 - 27517382 ------------------------AUGUGUGUAUACCUGCAAGAUGAUAAACUUGCAUCUUGUAUCCGUUUGGUUUGCUCUUAUCUCUGGCCAAGUAUGGCUACGUCAUUGGGUUU ------------------------......(((.((((((((((((.........))))))))).......))).))).((((...(((((((....)))))).)....))))... ( -19.91, z-score = -0.16, R) >droMoj3.scaffold_6540 2909355 106 - 34148556 AUGCAUGCGUGUGGAUGCAUGUGUAUGUAUGUGUGCAUAAAAUAAGUCCAGAAUGAUUAGAAUAUCAGCUUGGAGGGUUCAGGG-UAUCUCCUAGUCGAGCAGUCUC--------- (((((((((..((....))..)))))))))...(((..........(((((..((((......))))..))))).(..(.((((-....)))))..)..))).....--------- ( -27.60, z-score = -0.52, R) >consensus ______________AU_CAU_UGUAUGUGUAUAUACCUGCAAGAUGAUAAACUUGCAUCUUGUAUCCGUUUGGUUUGCUCUUAUCUCUGGCCAAGU__GGCUAUGCCAGUGGGUUU ............................(((((....(((((((((.........)))))))))....(((((((.............)))))))......))))).......... (-13.05 = -11.67 + -1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:36 2011